Astrocyte: Threshold Segmentation

None

Parameters

Input_Volume: 3D Volume ( input )

Voxel_Size: ListOf( Float ) ( optional, input )

Component_Min_Size: Integer ( input )

Component_Max_Size: Integer ( input )

Filter_Size: ListOf( Integer ) ( input )

Threshold: Integer ( input )

Map_Voxel_Size: ListOf( Float ) ( input )

Process_All: Boolean ( optional, input )

Verbose: Boolean ( optional, input )

Output_Directory: Directory ( optional, output )

Output_Format: Choice ( optional, input )

Output_Background_Volume: 3D Volume ( output )

Output_Labels_Volume: 3D Volume ( output )

Output_Features_Volume: 3D Volume ( optional, output )

Output_Map_Volume: 3D Volume ( optional, output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : AstrocyteThresholdSegmentation

File name : brainvisa/toolboxes/bioprocessing/processes/research/projects/astrocytes/AstrocyteThresholdSegmentation.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Directory :

Directory, Directory

Output_Background_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Labels_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Features_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Map_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image