[Atlas] Convert Volume of Labels / ROI graph

Conversion between volumes of labels and graph structures.

Parameters

Input: Any Type ( input )

Input volume.

• If a volume of labels is provided, the output will be a graph volume (.arg), with the nodes labelled according to the provided hierarchy. This allows a nice visualization of the volume in Anatomist.
• If a graph volume is provided, it will be converted to a volume of labels with values corresponding to thoses stored in the hierarchy.

Hierarchy: Hierarchy ( input )

Hierarchy whose node names should correspond to ROI names in the graph structure and label values should consider to integer values in the volume of labels.

Output: Any Type ( output )

Either a graph (if the input is a volume of labels) or a volume of labels (if the input is a graph).

Technical information

Toolbox : Primatologist

User level : 0

Identifier : AtlasVolumeToGraph

File name : brainvisa/toolboxes/primatologist/processes/atlases/AtlasVolumeToGraph.py

Supported file formats :

Input :

Graph and data, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Graph and data, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Hierarchy :

Hierarchy, Hierarchy

Output :

Graph and data, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, Graph and data, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image