[Volume] Block Matching

None

Parameters

Input_Reference_Volume: 3D Volume ( input )

Input_Reference_Mask: 3D Volume ( optional, input )

Channel_Reference: Choice ( optional, input )

Input_ToRegister_Volume: 3D Volume ( input )

Input_ToRegister_Mask: 3D Volume ( optional, input )

Channel_ToRegister: Choice ( optional, input )

Input_Init_Motion: Transformation matrix ( optional, input )

Write_Motion: Boolean ( optional, input )

Output_Transformation_Directory: Directory ( optional, input )

Output_Transformation: Transformation matrix ( optional, output )

Write_Registered_Volume: Boolean ( optional, input )

Output_Volume_Directory: Directory ( optional, input )

Output_Registered_Volume: 3D Volume ( optional, output )

Transformation_Type: Choice ( optional, input )

Start_Level: Integer ( optional, input )

Stop_Level: Integer ( optional, input )

Block_Size_X: Integer ( optional, input )

Block_Size_Y: Integer ( optional, input )

Block_Size_Z: Integer ( optional, input )

Invert_Output_Transformation: Boolean ( optional, input )

Background_Value: String ( optional, input )

Pct_MaxVar: Float ( optional, input )

Min_MaxVar: Float ( optional, input )

Pct_MinVar: Float ( optional, input )

Correlation_Th: Float ( optional, input )

Low_Ref_Th: Float ( optional, input )

High_Ref_Th: Float ( optional, input )

Low_TR_Th: Float ( optional, input )

High_TR_Th: Float ( optional, input )

Max_Iter: Integer ( optional, input )

Info: Boolean ( optional, input )

Debug_Level: Integer ( optional, input )

Verbose: Boolean ( optional, input )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : BasicBlockMatching

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/basic/Bio/BasicBlockMatching.py

Supported file formats :

Input_Reference_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Reference_Mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ToRegister_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ToRegister_Mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Init_Motion :

Transformation matrix, Transformation matrix

Output_Transformation_Directory :

Directory, Directory

Output_Transformation :

Transformation matrix, Transformation matrix

Output_Volume_Directory :

Directory, Directory

Output_Registered_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image