[Volume] Resample

Resampling. Applies a transformation matrix to a volume. Performs linear resampling

Parameters

Input_Volume: 3D Volume ( input )

Source volume

• Volume of U8
• Volume of U16
• Volume of U32
• Volume of S8
• Volume of S16
• Volume of S32
• Volume of FLOAT
• Volume of DOUBLE
• Volume of RGB
• Volume of RGBA

Input_Transformation: Transformation matrix ( optional, input )

Motion file [default=identity]

Output_Directory: Directory ( optional, input )

Output_Volume: 3D Volume ( output )

Destination volume

• Same type as input

Reference_Volume: 3D Volume ( optional, input )

Volume used to define output voxel size and volume dimension (values are overrided by Out_Dim_* and Out_Voxel_*)

Out_Dimension_X: Integer ( optional, input )

X dimension of the output volume (it is not used for resampling computation. Spare voxels are filled with Border_Value)

Out_Dimension_Y: Integer ( optional, input )

Y dimension of the output volume (it is not used for resampling computation. Spare voxels are filled with Border_Value)

Out_Dimension_Z: Integer ( optional, input )

Z dimension of the output volume (it is not used for resampling computation. Spare voxels are filled with Border_Value)

Out_Voxel_X: Float ( optional, input )

X voxel size of the output volume (it is used for resampling computation.)

Out_Voxel_Y: Float ( optional, input )

Y voxel size of the output volume (it is used for resampling computation.)

Out_Voxel_Z: Float ( optional, input )

Z voxel size of the output volume (it is used for resampling computation.)

Resampling_Mode: Choice ( optional, input )

Border_Value: String ( optional, input )

Value to give to spare voxels

Debug_Level: Integer ( optional, input )

Debug traces to print [default=0]

Verbose: Boolean ( optional, input )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : BasicResample

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/basic/Aims/BasicResample.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Transformation :

Transformation matrix, Transformation matrix

Output_Directory :

Directory, Directory

Output_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Reference_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image