Photography: 3D reconstruction pipeline

None

Parameters

Input_ListOf_2dImage: ListOf( 2D Image ) ( input )

Input_2dImage_Calibration: 2D Image ( input )

Landmark_Horizontal_Left: Point2D ( input )

Landmark_Horizontal_Right: Point2D ( input )

Landmark_Vertical_Top: Point2D ( input )

Landmark_Vertical_Down: Point2D ( input )

Landmark_Horizontal_Size: Float ( input )

Landmark_Vertical_Size: Float ( input )

Thickness: Float ( input )

Borders: ListOf( Float ) ( optional, input )

Output_Format: Choice ( input )

Output_Directory: Directory ( output )

Output_Volume: 3D Volume ( output )

Output_Mask: 3D Volume ( output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : BlockFacePhotographyPipeline

File name : brainvisa/toolboxes/brainrat/processes/photoreference/BlockFacePhotographyPipeline.py

Supported file formats :

Input_ListOf_2dImage :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_2dImage_Calibration :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Directory :

Directory, Directory

Output_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Mask :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image