ClearMap resampling

Resampling module with ClearMap librairy

Parameters

input: 3D Volume ( input )

processes: Integer ( input )

Number of processes launched in parallel

processMethod: Choice ( input )

'None' to process in serie, 'parallel' to process in parallel

resolutionSource: ListOf( Float ) ( input )

Resolution of the input source: given the typical zoom factor of 0.8x on the LaVision system with the 2x lens: 4.0625 4.0625 3.0

resolutionSink: ListOf( Float ) ( input )

Output file wanted resolution

interpolation: Choice ( input )

Interpolation chosen method 'linear' or 'nearestPixel'

orientation: ListOf( Integer ) ( optional, input )

Orientation tuple to set in order to match the orientation of the Atlas reference files used: 3 integers or relatives values

output: 3D Volume ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : ClearMapResampling

File name : brainvisa/toolboxes/bioprocessing/processes/research/projects/clearmap/ClearMapResampling.py

Supported file formats :

input :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image