Digital atlas prepare pipeline

None

Parameters

Input_Volume: 3D Volume ( input )

Input_Description_File: CSV file ( input )

Lateralized: Boolean ( input )

Output_Hierarchy: Hierarchy ( output )

Output_Volume: 3D Volume ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : DigitalAtlasPreparePipeline

File name : brainvisa/toolboxes/bioprocessing/processes/research/digitalatlas/DigitalAtlasPreparePipeline.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Description_File :

CSV file, CSV file

Output_Hierarchy :

Hierarchy, Hierarchy

Output_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image