01. volume - digital atlas registration on volume

None

Parameters

Input_Label_Atlas: 3D Volume ( input )

Motion_Atlas_TO_reference: Transformation matrix ( input )

Input_FFD_Reference: 3D Volume ( input )

Input_Vector_Field: 3D Volume ( input )

Label_Atlas_Min: Integer ( input )

Label_Atlas_Max: Integer ( input )

Output_Label_Atlas: 3D Volume ( output )

Output_Label_Coef: 3D Volume ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : DigitalAtlasRegistrationOnVolume

File name : brainvisa/toolboxes/bioprocessing/processes/research/digitalatlas/obsolete_components/DigitalAtlasRegistrationOnVolume.py

Supported file formats :

Input_Label_Atlas :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Motion_Atlas_TO_reference :

Transformation matrix, Transformation matrix

Input_FFD_Reference :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Vector_Field :

GIS image, GIS image

Output_Label_Atlas :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Label_Coef :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image