Elastix transformation estimation

Transformation calculation for registration via Elastix

Parameters

test: 3D Volume ( input )

Image source of the moving image (typically the image to be registred)

reference: 3D Volume ( input )

Image source of the fixed image (typically the reference image)

threads: Integer ( input )

affine: Text file ( input )

Elastix parameter file for the primary affine tranqformation

spline: Text file ( optional, input )

Elastix parameter file for the secondary non-linear transformation

output: Directory ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : ElastixTransformationEstimation

File name : brainvisa/toolboxes/bioprocessing/processes/research/projects/clearmap/ElastixTransformationEstimation.py

Supported file formats :

test :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

reference :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

affine :

Text file, Text file

spline :

Text file, Text file

output :

Directory, Directory