FlipApplication

This process enables to flip a volume either in a mirror way or swapping coordinates.

Parameters

Input_Volume: 3D Volume ( input )

Click on .
Select the volume to be flipped, for instance Test_volume_rat1_cresyl.ima.

Flip_Parameter_1: Choice ( input )

Choose the first flip mode among the list, for instance zz (swap the Z-axis i.e. reverse the Z-axis coordinates).
Concerning our demonstration data, it reverses the stack order of slices (from antero-posterior to postero-anterior relationship).

Flip_Parameter_2: Choice ( optional, input )

Choose the second flip mode among the list, for instance yy (swap the Y-axis i.e. reverse the Y-axis coordinates).
Concerning our demonstration data, it flips the volume in a horizontal mirror way.
This parameter is optional and by default set to None.

Flip_Parameter_3: Choice ( optional, input )

Choose the third flip mode among the list.
This parameter is optional and by default set to None.

Output_Volume: 3D Volume ( optional, output )

Click on .
Specify the output directory and enter the output file name, for instance Test_flipzzyy_volume_rat1_cresyl.ima.
This parameter is optional. If you do not complete it, you will be notified by a warning message that the process will be going to overwrite the input volume.

Technical information

Toolbox : BrainRAT

User level : 0

Identifier : FlipApplication

File name : brainvisa/toolboxes/brainrat/processes/toolbox/FlipApplication.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image