{Importer} Histology scan

None

Parameters

input: Histology scan ( input )

database: Choice ( input )

format: Choice ( input )

type: Choice ( input )

study: String ( input )

center: String ( input )

specie: OpenChoice ( input )

subjects: ListOf( String ) ( input )

marker: OpenChoice ( input )

scan_session: String ( input )

scan_number: Integer ( input )

serie: Integer ( input )

number_of_slices: Integer ( input )

number_of_lines_per_slide: Integer ( input )

number_of_columns_per_slide: Integer ( input )

resolution_levels: ListOf( Integer ) ( optional, input )

time_point: String ( optional, input )

acquisition_date: String ( optional, input )

output_files: ListOf( Histology scan ) ( output )

output_bounding_boxes: Histology scan bounding boxes ( optional, output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : ImportScan

File name : brainvisa/toolboxes/bioprocessing/processes/import/ImportScan.py

Supported file formats :

input :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output_files :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_bounding_boxes :

JSON file, JSON file