Quantification: multiple 3D hierarchical analysis pipeline

None

Parameters

Input_ListOf_3dImage: ListOf( 3D Volume ) ( input )

Input_Volume_ROI: 3D Volume ( input )

Input_Hierarchy: Hierarchy ( optional, input )

Volume: Boolean ( input )

Percent_Amount_Of_Staining: Boolean ( input )

Output_Directory: Directory ( optional, output )

Output_ListOf_Csv: ListOf( CSV file ) ( output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : MultipleVolume3DHierarchicalStatisticGeneration

File name : brainvisa/toolboxes/brainrat/processes/pmianalysis/MultipleVolume3DHierarchicalStatisticGeneration.py

Supported file formats :

Input_ListOf_3dImage :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Volume_ROI :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Hierarchy :

Hierarchy, Hierarchy

Output_Directory :

Directory, Directory

Output_ListOf_Csv :

CSV file, CSV file