Histogram analysis

Analyse a T1-weighted histogram to estimate grey/white statistics

Description

This new histogram analysis can only be used after the new bias correction. It should deal better with large fat modes.

Parameters

t1mri_nobias: T1 MRI Bias Corrected ( input )

use_hfiltered: Boolean ( input )

hfiltered: T1 MRI Filtered For Histo ( optional, input )

use_wridges: Boolean ( input )

white_ridges: T1 MRI White Matter Ridges ( optional, input )

undersampling: Choice ( input )

histo_analysis: Histo Analysis ( output )

histo: Histogram ( output )

fix_random_seed: Boolean ( input )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : NobiasHistoAnalysis

File name : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/NobiasHistoAnalysis.py

Supported file formats :

t1mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

hfiltered :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

white_ridges :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

histo_analysis :

Histo Analysis, Histo Analysis

histo :

Histogram, Histogram