Registration pipeline v2

None

Parameters

Input_Volume: 3D Volume ( input )

Input_Volume_Test: 3D Volume ( input )

Channel: Choice ( input )

Input_Volume_Reference: 3D Volume ( input )

Channel_Reference: Choice ( input )

Mutual_Information_Activated: Boolean ( input )

Rigid_Activated: Boolean ( input )

Affine_Activated: Boolean ( input )

Deformation_Activated: Boolean ( input )

Resampling_Activated: Boolean ( input )

Optimization_Level_Start: Integer ( optional, input )

Optimization_Level_Stop: Integer ( optional, input )

Optimization_Level_Iteration: Integer ( input )

Optimization_Blocks_Kept: Float ( input )

Optimization_Grid_Knot_Start: ListOf( Integer ) ( input )

Optimization_Grid_Knot_Stop: ListOf( Integer ) ( input )

Optimization_Grid_Knot_Step: ListOf( Integer ) ( input )

Optimization_Minimum_Iteration: Integer ( input )

Optimization_Iteration_Coefficient: Integer ( input )

Optimization_Criterion_Stop: Float ( input )

Background_Color: String ( optional, input )

Output_Directory: Directory ( optional, output )

Output_Transformation: Transformation matrix ( optional, output )

Output_Displacement_Field: 3D Volume ( optional, input )

Output_Volume: 3D Volume ( optional, output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : RegistrationPipeline_v2

File name : brainvisa/toolboxes/brainrat/processes/toolbox/registration/RegistrationPipeline_v2.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Volume_Test :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Volume_Reference :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Directory :

Directory, Directory

Output_Transformation :

Transformation matrix, Transformation matrix

Output_Displacement_Field :

GIS image, GIS image

Output_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image