Heat map generation

None

Parameters

Input_Volume: 3D Volume ( input )

Input_Mask: 3D Volume ( optional, input )

Label_Value: Integer ( optional, input )

Scale_Factor: Float ( input )

Filter_Connectivity: Choice ( optional, input )

Filter_Min_Size: Integer ( optional, input )

Gaussian_Sigma_X: Float ( optional, input )

Gaussian_Sigma_Y: Float ( optional, input )

Gaussian_Sigma_Z: Float ( optional, input )

Sub_Sampling_X: Integer ( optional, input )

Sub_Sampling_Y: Integer ( optional, input )

Sub_Sampling_Z: Integer ( optional, input )

Sub_Sampling_Mode: Choice ( input )

Output_Directory: Directory ( optional, output )

Output_Volume: 3D Volume ( output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : VolumeHeatMapGeneration

File name : brainvisa/toolboxes/brainrat/processes/pmianalysis/VolumeHeatMapGeneration.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Directory :

Directory, Directory

Output_Volume :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image