[ANTs] Apply Transform

None

Parameters

input_image: 3D Volume ( input )

input_reference: 3D Volume ( input )

input_transforms: ListOf( ANTs Transformation ) ( input )

inverse_transforms: ListOf( Boolean ) ( optional, input )

image_dimension: Choice ( optional, input )

image_type: Choice ( optional, input )

interpolation: Choice ( optional, input )

interpolation_sigma: OpenChoice ( optional, input )

interpolation_alpha: Float ( optional, input )

spline_order: Integer ( optional, input )

default_value: Float ( optional, input )

precision: Choice ( optional, input )

write_output_warped_image: Boolean ( optional, input )

write_output_displacement_field: Boolean ( optional, input )

write_output_affine: Boolean ( optional, input )

write_output_inverse_affine: Boolean ( optional, input )

output_directory: Directory ( optional, input )

output_warped_image: 3D Volume ( output )

output_displacement_field: 3D Volume ( optional, output )

output_affine_transform: ANTs Linear Transformation ( optional, output )

output_inverse_affine_transform: ANTs Linear Transformation ( optional, output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : antsApplyTransforms

File name : brainvisa/toolboxes/bioprocessing/processes/research/registration/antsApplyTransforms.py

Supported file formats :

input_image :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_reference :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_transforms :

Matlab file, Matlab file, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_directory :

Directory, Directory

output_warped_image :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_displacement_field :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_affine_transform :

Matlab file, Matlab file

output_inverse_affine_transform :

Matlab file, Matlab file