Brain Volumes

None

Parameters

split_brain: Split Brain Mask ( input )

left_grey_white: Left Grey White Mask ( input )

right_grey_white: Right Grey White Mask ( input )

left_csf: Left CSF Mask ( output )

right_csf: Right CSF Mask ( output )

left_labelled_graph: Labelled Cortical folds graph ( optional, input )

right_labelled_graph: Labelled Cortical folds graph ( optional, input )

left_gm_mesh: Hemisphere Mesh ( optional, input )

right_gm_mesh: Hemisphere Mesh ( optional, input )

left_wm_mesh: Hemisphere White Mesh ( optional, input )

right_wm_mesh: Hemisphere White Mesh ( optional, input )

subject: String ( input )

sulci_label_attribute: String ( input )

table_format: Choice ( input )

brain_volumes_file: Brain volumetry measurements ( output )

Technical information

Toolbox : Morphologist

User level : 1

Identifier : brainvolumes

File name : brainvisa/toolboxes/morphologist/processes/morphometry/brainvolumes.py

Supported file formats :

split_brain :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

left_grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

right_grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

left_csf :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

right_csf :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

left_labelled_graph :

Graph and data, Graph and data

right_labelled_graph :

Graph and data, Graph and data

left_gm_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

right_gm_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

left_wm_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

right_wm_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

brain_volumes_file :

CSV file, CSV file