Check raw data pipeline (PET)

None

Parameters

pet_dicoms_directory: Directory ( input )

ct_dicoms_directory: Directory ( optional, input )

t1mri_dicoms_directory: Directory ( optional, input )

joined_modality: Choice ( input )

add_to_group: Subject Group ( optional, input )

attempt_study_recognition: Boolean ( input )

study: Choice ( input )

database: Choice ( input )

center: String ( input )

subject: String ( input )

acquisition: String ( input )

tracer: String ( input )

pet_reconstruction: String ( optional, input )

delay_time: Float ( optional, input )

weight: Float ( optional, input )

dose_injected: Float ( optional, input )

tracer_half_life: Float ( optional, input )

blood_sugar: String ( optional, input )

pet_acquisition_date: String ( optional, input )

ct_reconDiam: String ( optional, input )

t1mri_acquisition_date: String ( optional, input )

t1mri_description: String ( optional, input )

t1mri_mp2rage: Boolean ( input )

pet_dicoms_zip: PET raw dicom ( optional, output )

pet_dynamic: PET dynamic ( optional, output )

pet_dynamic_realigned: PET dynamic realigned ( optional, output )

pet_mean: PET mean ( output )

pet_referential: referential of PET ( output )

pet_acquisition_data: PET acquisition data ( optional, output )

ct_dicoms_zip: CT raw dicom ( optional, output )

ct: CT ( optional, output )

ct_referential: referential of CT ( optional, output )

ct_acquisition_data: CT acquisition data ( optional, output )

t1mri_dicoms_zip: T1 MRI raw dicom ( optional, output )

t1mri: Raw T1 MRI ( optional, output )

t1mri_referential: Referential of Raw T1 MRI ( optional, output )

t1mri_acquisition_data: Raw T1 MRI acquisition data ( optional, output )

ct_to_pet: CT to PET transformation file ( output )

t1mri_to_pet: Raw T1 MRI to PET transformation file ( optional, output )

pet_mean_baseline: PET mean ( optional, output )

QC_report: PDF Board ( output )

pet_mean_reset: 4D Volume ( output )

ct_reset: 4D Volume ( output )

ct_to_pet_spm: Transformation matrix ( output )

t1mri_reset: 4D Volume ( output )

t1mri_to_pet_spm: Transformation matrix ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : checkRawDataPipeline_pet

File name : brainvisa/toolboxes/nuclearimaging/processes/checkRawDataPipeline_pet.py

Supported file formats :

pet_dicoms_directory :

Directory, Directory

ct_dicoms_directory :

Directory, Directory

t1mri_dicoms_directory :

Directory, Directory

add_to_group :

JSON file, JSON file

pet_dicoms_zip :

ZIP file, ZIP file

pet_dynamic :

Directory, Directory

pet_dynamic_realigned :

Directory, Directory

pet_mean :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

pet_referential :

Referential, Referential

pet_acquisition_data :

JSON file, JSON file

ct_dicoms_zip :

ZIP file, ZIP file

ct :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

ct_referential :

Referential, Referential

ct_acquisition_data :

JSON file, JSON file

t1mri_dicoms_zip :

ZIP file, ZIP file

t1mri :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_referential :

Referential, Referential

t1mri_acquisition_data :

JSON file, JSON file

ct_to_pet :

Transformation matrix, Transformation matrix

t1mri_to_pet :

Transformation matrix, Transformation matrix

pet_mean_baseline :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

QC_report :

PDF File, PDF File

pet_mean_reset :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

ct_reset :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

ct_to_pet_spm :

Transformation matrix, Transformation matrix

t1mri_reset :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_to_pet_spm :

Transformation matrix, Transformation matrix