Deformation DISCO Pipeline

Considering DISCO deformations, this tool apply the display field to your graph, meshes and volume.

You just have to select the study directory of the experiment (study_dir).

Parameters

study_dir: DISCO Study Dir ( input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( input )

final_disp_field: ListOf( FFD Field defData DISCO ) ( input )

inv_final_disp_field: ListOf( FFD Field defData Inversed DISCO ) ( input )

Lgraph: ListOf( Labelled Cortical folds graph ) ( input )

Rgraph: ListOf( Labelled Cortical folds graph ) ( input )

mesh_Lhemi: ListOf( Left Hemisphere Mesh ) ( input )

mesh_Lwhite: ListOf( Left Hemisphere White Mesh ) ( input )

mesh_Rhemi: ListOf( Right Hemisphere Mesh ) ( input )

mesh_Rwhite: ListOf( Right Hemisphere White Mesh ) ( input )

nobias: ListOf( T1 MRI Bias Corrected ) ( input )

Lgraph_deformed: ListOf( Labelled Cortical folds graph DISCO ) ( output )

Rgraph_deformed: ListOf( Labelled Cortical folds graph DISCO ) ( output )

mesh_Lhemi_deformed: ListOf( Left Hemisphere Mesh DISCO ) ( output )

mesh_Lwhite_deformed: ListOf( Left Hemisphere White Mesh DISCO ) ( output )

mesh_Rhemi_deformed: ListOf( Right Hemisphere Mesh DISCO ) ( output )

mesh_Rwhite_deformed: ListOf( Right Hemisphere White Mesh DISCO ) ( output )

nobias_deformed: ListOf( T1 MRI Bias Corrected DISCO ) ( output )

Technical information

Toolbox : Disco

User level : 0

Identifier : deformation_disco_pipeline

File name : brainvisa/toolboxes/disco/processes/Deformation/deformation_disco_pipeline.py

Supported file formats :

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

final_disp_field :

GIS image, GIS image

inv_final_disp_field :

GIS image, GIS image

Lgraph :

Graph and data, Graph and data

Rgraph :

Graph and data, Graph and data

mesh_Lhemi :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Lwhite :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rhemi :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rwhite :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

nobias :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Lgraph_deformed :

Graph and data, Graph and data

Rgraph_deformed :

Graph and data, Graph and data

mesh_Lhemi_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Lwhite_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rhemi_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rwhite_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

nobias_deformed :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image