DICE index

DICE index calculation on a set of images

Description

DICE index (2*intersection / union) is calculated for a set of label images. Each object (image value) has its DICE calculated for each pair of images. The output is a symmetric table, where each image is crossed to each other, for each object.

Parameters

label_images: ListOf( Label volume ) ( input )

csv_output: CSV file ( output )

image_labels: ListOf( String ) ( input )

names of table headers in the csv_output

output_format: Choice ( input )

reference_space_image: Label volume ( optional, input )

transformations: ListOf( ListOf( Transformation matrix ) ) ( optional, input )

Technical information

Toolbox : Tools

User level : 0

Identifier : diceIndex

File name : brainvisa/toolboxes/tools/processes/roi/diceIndex.py

Supported file formats :

label_images :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

csv_output :

CSV file, CSV file

reference_space_image :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

transformations :

Transformation matrix, Transformation matrix