Evaluation pipeline

None

Parameters

template_dir: DARTEL Template Dir ( input )

Lgrey_white: ListOf( Left Grey White Mask ) ( input )

Rgrey_white: ListOf( Right Grey White Mask ) ( input )

nobias: ListOf( T1 MRI Bias Corrected DISCO DARTEL ) ( input )

inv_final_disp_field: ListOf( FFD Field defData Inversed DISCO DARTEL ) ( input )

brain_mask: Brain Mask DISCO DARTEL ( output )

brain_masked_norm: ListOf( T1 MRI Bias Corrected Normalized Masked DISCO DARTEL ) ( output )

average_nobias: Average T1 MRI Bias DISCO DARTEL ( output )

average_brain: Average T1 MRI Bias Brain Alone DISCO DARTEL ( output )

average_grey: Average cortical ribbon DISCO DARTEL ( output )

nobias_4D: T1 MRI 4D Bias Normalized DISCO DARTEL ( output )

Technical information

Toolbox : Disco

User level : 1

Identifier : eval_pipeline

File name : brainvisa/toolboxes/disco/processes/Evaluation/eval_pipeline.py

Supported file formats :

template_dir :

Directory, Directory

Lgrey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Rgrey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

nobias :

NIFTI-1 image, NIFTI-1 image

inv_final_disp_field :

GIS image, GIS image

brain_mask :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

brain_masked_norm :

NIFTI-1 image, NIFTI-1 image

average_nobias :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

average_brain :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

average_grey :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

nobias_4D :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image