subject versus group (full pipeline in SPM12)

None

Parameters

pet_dicoms_directory: Directory ( input )

ct_dicoms_directory: Directory ( input )

study: Choice ( input )

database: Choice ( input )

center: String ( input )

subject: String ( input )

acquisition: String ( input )

tracer: String ( input )

pet_mean: PET mean ( output )

pet_template: PET Template ( input )

pet_mean_mni_smooth_fwhm: ListOf( Integer ) ( input )

factoriel_design_type: Choice ( input )

spm_workspace_directory: Voxel by voxel comparison SPM workspace directory ( output )

image_type: Choice ( input )

smooth_fwhm: ListOf( Integer ) ( input )

implicit_mask: Boolean ( input )

explicit_mask: explicit mask for SPM analysis ( optional, input )

group_temoins: Subject Group ( input )

group: Subject Group ( output )

contrast_0_title: String ( input )

contrast_0_vector: ListOf( Float ) ( input )

contrast_0_threshold_type: Choice ( input )

contrast_0_threshold: Float ( input )

contrast_0_extent: Integer ( input )

contrast_1_title: String ( input )

contrast_1_vector: ListOf( Float ) ( input )

contrast_1_threshold_type: Choice ( input )

contrast_1_threshold: Float ( input )

contrast_1_extent: Integer ( input )

anatomical: SPM single subject ( input )

anatomical_mesh_R: Left Hemisphere Mesh ( input )

anatomical_mesh_L: Right Hemisphere Mesh ( input )

contrast_0: SPM filtered image ( output )

contrast_1: SPM filtered image ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : fullPipeline_subjectVersusGroup_spm12

File name : brainvisa/toolboxes/nuclearimaging/processes/all_in_one/fullPipeline_subjectVersusGroup_spm12.py

Supported file formats :

pet_dicoms_directory :

Directory, Directory

ct_dicoms_directory :

Directory, Directory

pet_mean :

NIFTI-1 image, NIFTI-1 image

pet_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

spm_workspace_directory :

Directory, Directory

explicit_mask :

NIFTI-1 image, NIFTI-1 image

group_temoins :

JSON file, JSON file

group :

JSON file, JSON file

anatomical :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

anatomical_mesh_R :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

anatomical_mesh_L :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

contrast_0 :

NIFTI-1 image, NIFTI-1 image

contrast_1 :

NIFTI-1 image, NIFTI-1 image