Graph Structure (3.1)

None

Parameters

side: Choice ( input )

mri_corrected: T1 MRI Bias Corrected ( input )

split_mask: Split Brain Mask ( input )

hemi_cortex: CSF+GREY Mask ( input )

skeleton: Cortex Skeleton ( output )

roots: Cortex Catchment Bassins ( output )

graph_version: OpenChoice ( input )

graph: Cortical folds graph ( output )

commissure_coordinates: Commissure coordinates ( optional, input )

Talairach_transform: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( input )

compute_fold_meshes: Boolean ( input )

allow_multithreading: Boolean ( input )

fix_random_seed: Boolean ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : graphstructure_3_1

File name : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/lowlevel/graphstructure_3_1.py

Supported file formats :

mri_corrected :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

split_mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

hemi_cortex :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

skeleton :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

roots :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

graph :

Graph and data, Graph and data

commissure_coordinates :

Commissure coordinates, Commissure coordinates

Talairach_transform :

Transformation matrix, Transformation matrix