Import Vois

Process to import mask/atlas used in PET processes.

Parameters

voi_space: Choice ( input )

Space of VOI or atlas to import.

t1mri_nobias: T1 MRI Bias Corrected ( optional, input )

T1 MRI in the same space as VOI to import. Only used to visualise atlas and select VOI labels manually. Not used if `voi_translation` already given.

atlas_label_mask: ListOf( atlas label volume ) ( optional, input )

atlas_label_translation: ListOf( atlas label volume translation ) ( optional, input )

voi_to_import: 4D Volume ( input )

File of VOI to import.

voi_translation: Text file ( optional, input )

JSON file of translation of labels in `voi_to_import`.

voi_type: Choice ( input )

voi_name: String ( input )

Name of the VOI in Brainvisa database.

atlas_name: String ( optional, input )

Name of the altas in Brainvisa database.

voi_stat_imported: quantitative analysis label volume ( output )

voi_stat_translation: quantitative analysis label volume translation ( output )

voi_ref_imported: reference region mask ( optional, output )

voi_ref_translation: reference region mask translation ( optional, output )

atlas_imported: atlas label volume ( optional, output )

atlas_translation: atlas label volume translation ( optional, output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : importVois

File name : brainvisa/toolboxes/nuclearimaging/processes/import/importVois.py

Supported file formats :

t1mri_nobias :

NIFTI-1 image, NIFTI-1 image

atlas_label_mask :

NIFTI-1 image, NIFTI-1 image

atlas_label_translation :

JSON file, JSON file

voi_to_import :

NIFTI-1 image, NIFTI-1 image

voi_translation :

JSON file, JSON file

voi_stat_imported :

NIFTI-1 image, NIFTI-1 image

voi_stat_translation :

JSON file, JSON file

voi_ref_imported :

NIFTI-1 image, NIFTI-1 image

voi_ref_translation :

JSON file, JSON file

atlas_imported :

NIFTI-1 image, NIFTI-1 image

atlas_translation :

JSON file, JSON file