ml - Weighted Random Forest image-level cross-validation pipeline

None

Parameters

ListOf_Input_Image: ListOf( 3D Volume ) ( input )

ListOf_Input_Segmented_Image: ListOf( Graph ) ( input )

Color: Choice ( input )

Neighborhood_Mean: Boolean ( input )

Neighborhood_Variance: Boolean ( input )

Neighborhood_Window: Boolean ( input )

Neighborhood_Amplitude: Integer ( optional, input )

Layers: Boolean ( input )

Layers_Shape: Choice ( input )

List_Of_Layers_Amplitudes: ListOf( Integer ) ( optional, input )

Gabor: Boolean ( input )

List_Of_Sigma: ListOf( Float ) ( optional, input )

List_Of_Theta: ListOf( Float ) ( optional, input )

List_Of_Lambda: ListOf( Float ) ( optional, input )

List_Of_Psi: ListOf( Float ) ( optional, input )

List_Of_Gamma: ListOf( Float ) ( optional, input )

List_Of_Real: ListOf( Integer ) ( optional, input )

Output_Features_Image_Directory: Directory ( output )

List_Of_Output_Features_Image: ListOf( 3D Volume ) ( output )

Classes_Weights: ListOf( Float ) ( input )

N_Trees: Integer ( input )

K_Folds: Integer ( input )

Output_Feature_Description: Text file ( output )

Append_Mean_Performance: Boolean ( input )

Mean_Performance: Text file ( output )

Output_CV_Performance: Text file ( output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : ml_random_forest_CV_pipeline

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/machine_learning/ml_toolbox/ml_random_forest_CV_pipeline.py

Supported file formats :

ListOf_Input_Image :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

ListOf_Input_Segmented_Image :

Graph and data, Graph and data

Output_Features_Image_Directory :

Directory, Directory

List_Of_Output_Features_Image :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Feature_Description :

Text file, Text file

Mean_Performance :

Text file, Text file

Output_CV_Performance :

Text file, Text file