Anatomy Normalization (using AimsMIRegister)

None

Parameters

anatomy_data: Raw T1 MRI ( input )

anatomical_template: anatomical Template ( input )

transformation_to_template: Transformation matrix ( optional, output )

normalized_anatomy_data: Raw T1 MRI ( optional, output )

transformation_to_MNI: Transform Raw T1 MRI to Talairach-MNI template-SPM ( optional, output )

transformation_to_ACPC: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( optional, output )

mni_to_acpc: Transformation matrix ( optional, input )

smoothing: Float ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : normalization_aimsmiregister

File name : brainvisa/toolboxes/morphologist/processes/registration/normalization_aimsmiregister.py

Supported file formats :

anatomy_data :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

anatomical_template :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

transformation_to_template :

Transformation matrix, Transformation matrix

normalized_anatomy_data :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

transformation_to_MNI :

Transformation matrix, Transformation matrix

transformation_to_ACPC :

Transformation matrix, Transformation matrix

mni_to_acpc :

Transformation matrix, Transformation matrix