Skull-stripped brain normalization

None

Parameters

t1mri: Raw T1 MRI ( input )

brain_mask: Brain Mask ( input )

template: anatomical Template ( input )

skull_stripped: Raw T1 MRI Brain Masked ( output )

transformation: Transform Raw T1 MRI to Talairach-MNI template-SPM ( output )

talairach_transformation: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( output )

commissure_coordinates: Commissure coordinates ( output )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : normalization_skullstripped

File name : brainvisa/toolboxes/morphologist/processes/registration/normalization_skullstripped.py

Supported file formats :

t1mri :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

brain_mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

skull_stripped :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

transformation :

Transformation matrix, Transformation matrix

talairach_transformation :

Transformation matrix, Transformation matrix

commissure_coordinates :

Commissure coordinates, Commissure coordinates