Sulci Thickness and Volumes

None

Parameters

input_sulci_graph: Graph ( input )

input_topology: 3D Volume ( input )

input_grey_white: 3D Volume ( input )

input_white_mesh: Mesh ( input )

input_pial_mesh: Mesh ( input )

write_mid_interface: Boolean ( input )

output_sulci_graph: Graph ( output )

output_mid_interface: 3D Volume ( optional, output )

output_sulci_voronoi: 3D Volume ( output )

Technical information

Toolbox : Primatologist

User level : 0

Identifier : primate_CorticalFoldsThickness

File name : brainvisa/toolboxes/primatologist/processes/blocks/primate_CorticalFoldsThickness.py

Supported file formats :

input_sulci_graph :

Graph and data, Graph and data

input_topology :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_white_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

input_pial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_sulci_graph :

Graph and data, Graph and data

output_mid_interface :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_sulci_voronoi :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image