Hemi Surfaces and Sulci Extraction

None

Parameters

input_t1_mri_nobias: P:MRI Bias Corrected ( input )

specie: OpenChoice ( optional, input )

contrast: OpenChoice ( optional, input )

is_mapping: Boolean ( optional, input )

side: Choice ( input )

grey_white: Grey White Mask ( optional, input )

split_brain: Split Brain Mask ( optional, input )

commissure: Commissure coordinates ( optional, input )

t1_histo_analysis: P:MRI Histo Analysis ( optional, input )

transform: P:Subject to Talairach-AC/PC-Anatomist Transformation ( optional, input )

output_greywhite_mesh: Hemisphere White Mesh ( optional, output )

output_pial_mesh: Hemisphere Mesh ( optional, output )

output_sulci: Cortical folds graph ( optional, output )

Technical information

Toolbox : Primatologist

User level : 0

Identifier : primate_HemiSurfacesAndSulciPipeline

File name : brainvisa/toolboxes/primatologist/processes/pipelines/primate_HemiSurfacesAndSulciPipeline.py

Supported file formats :

input_t1_mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

split_brain :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

commissure :

Commissure coordinates, Commissure coordinates

t1_histo_analysis :

Histo Analysis, Histo Analysis

transform :

Transformation matrix, Transformation matrix

output_greywhite_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_pial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_sulci :

Graph and data, Graph and data