Resampling

Interface of AimsApplyTransform command

Parameters

Input_ListOf_Image: ListOf( 3D Volume ) ( input )

Upload list of images

Volume_Dimension: ListOf( Integer ) ( optional, input )

Enter the dimension volume [dx, dy, dz] of the resampled volume.

Voxel_Size: ListOf( Float ) ( optional, input )

Enter the voxel size [sx, sy, sz] of the resampled volume in mm.

Borders_Value: ListOf( Integer ) ( optional, input )

Resampling_Type: Choice ( input )

choose the resampling type for your application (Linear, Nearest, Quadratic, Cubic)

Motion_Matrix: ListOf( Transformation matrix ) ( optional, input )

Specify the list of motion files

Output_Directory: Directory ( optional, input )

Specify the output directory in which the volumes will be stored.

Output_ListOf_Image: ListOf( 3D Volume ) ( output )

Specify the list of output images.

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : resample

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/resample.py

Supported file formats :

Input_ListOf_Image :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Motion_Matrix :

Transformation matrix, Transformation matrix

Output_Directory :

Directory, Directory

Output_ListOf_Image :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image