set_image_normalization

Set normalization transformation info into an image or mesh file

Description

Transformation info is read from a .trm file and written into the data file, if the data format supports it (anyway it will be in the .minf file attached to the data).
It will typically work for NIFTI images or GIFTI meshes, and will allow exchanging these files, with normalization information inside, with other teams and tools.
It will work only on AIMS supported types (volumes, meshes...) but will fail on other unsupported data types.

Parameters

data_type: Choice ( input )

input_data: Raw T1 MRI ( input )

output_data: Raw T1 MRI ( output )

transformation: Transform Raw T1 MRI to Talairach-MNI template-SPM ( input )

dest_referential: OpenChoice ( input )

insert_first: Boolean ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : set_image_normalization

File name : brainvisa/toolboxes/morphologist/processes/tools/set_image_normalization.py

Supported file formats :

input_data :

gz compressed ECAT i image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

output_data :

gz compressed ECAT i image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image

transformation :

Transformation matrix, Transformation matrix