Sulci Distance to Lesion Stats

None

Parameters

lgrey_white: ListOf( Left Grey White Mask ) ( optional, input )

rgrey_white: ListOf( Right Grey White Mask ) ( optional, input )

lesion_mask: ListOf( Lesion Mask ) ( input )

distance_map: ListOf( Lesion distance map ) ( optional, output )

lgraph: ListOf( Labelled Cortical folds graph ) ( optional, input )

rgraph: ListOf( Labelled Cortical folds graph ) ( optional, input )

output_csv: CSV file ( output )

nomenclature: Nomenclature ( optional, input )

model: Model graph ( optional, input )

region_selection: LabelSelection ( optional, input )

label_attribute: Choice ( input )

reuse_existing_distancemap: Boolean ( input )

lesions_sizes: CSV file ( optional, output )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : sulciDistanceToLesionStats

File name : brainvisa/toolboxes/morphologist/processes/morphometry/Sulci/sulciDistanceToLesionStats.py

Supported file formats :

lgrey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

rgrey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

lesion_mask :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

distance_map :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

lgraph :

Graph and data, Graph and data

rgraph :

Graph and data, Graph and data

output_csv :

CSV file, CSV file

nomenclature :

Hierarchy, Hierarchy

model :

Graph and data, Graph and data

lesions_sizes :

CSV file, CSV file