transform_between_subjects_pipeline

None

Parameters

input_subject: Labelled Cortical folds graph ( optional, input )

study_type: Choice ( input )

template_dir: DARTEL Template Dir ( optional, input )

study_dir: DISCO Study Dir ( optional, input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( optional, input )

input_space: Choice ( input )

morphologist_to_input_transformation: Transformation matrix ( optional, input )

input_to_morphologist_transformation: Transformation matrix ( optional, input )

output_subject: Labelled Cortical folds graph ( optional, input )

output_space: Choice ( input )

morphologist_to_output_transformation: Transformation matrix ( optional, input )

output_to_morphologist_transformation: Transformation matrix ( optional, input )

output_reference: 4D Volume ( optional, input )

vectorinterpolation: Choice ( input )

input_subject_to_common_space: FFD Field defData DISCO DARTEL ( input )

common_space_to_output_subject: FFD Field defData Inversed DISCO DARTEL ( input )

output_subject_to_common_space: FFD Field defData DISCO DARTEL ( optional, input )

common_space_to_input_subject: FFD Field defData Inversed DISCO DARTEL ( optional, input )

output_nobias: Nobias Inversed DARTEL and DISCO ( output )

output_Lhemi: Left Hemisphere Mesh Inversed DARTEL and DISCO ( output )

output_Rhemi: Right Hemisphere Mesh Inversed DARTEL and DISCO ( output )

output_Lwhite: Left Hemisphere White Mesh Inversed DARTEL and DISCO ( output )

output_Rwhite: Right Hemisphere White Mesh Inversed DARTEL and DISCO ( output )

output_Lgraph: Labelled Cortical folds graph Inversed DARTEL and DISCO ( output )

output_Rgraph: Labelled Cortical folds graph Inversed DARTEL and DISCO ( output )

Technical information

Toolbox : Disco

User level : 0

Identifier : transform_between_subjects_pipeline

File name : brainvisa/toolboxes/disco/processes/Deformation/transform_between_subjects_pipeline.py

Supported file formats :

input_subject :

Graph and data, Graph and data

template_dir :

Directory, Directory

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

morphologist_to_input_transformation :

Transformation matrix, Transformation matrix

input_to_morphologist_transformation :

Transformation matrix, Transformation matrix

output_subject :

Graph and data, Graph and data

morphologist_to_output_transformation :

Transformation matrix, Transformation matrix

output_to_morphologist_transformation :

Transformation matrix, Transformation matrix

output_reference :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_subject_to_common_space :

GIS image, GIS image

common_space_to_output_subject :

GIS image, GIS image

output_subject_to_common_space :

GIS image, GIS image

common_space_to_input_subject :

GIS image, GIS image

output_nobias :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

output_Lhemi :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_Rhemi :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_Lwhite :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_Rwhite :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_Lgraph :

Graph and data, Graph and data

output_Rgraph :

Graph and data, Graph and data