Voxel by voxel analysis (SPM12)

None

Parameters

output_database: Choice ( input )

factoriel_design: Boolean ( input )

factoriel_design_type: Choice ( input )

group: Subject Group ( input )

group_images: ListOf( PET mean smoothed ) ( input )

group_1: Subject Group ( optional, input )

group_1_images: ListOf( PET mean smoothed ) ( optional, input )

group_2: Subject Group ( optional, input )

group_2_images: ListOf( PET mean smoothed ) ( optional, input )

covariate_table: Covariate table for SPM ( optional, input )

covariate_table_group1: Covariate table for SPM ( optional, input )

covariate_table_group2: Covariate table for SPM ( optional, input )

nuisance_covariate_list: ListOf( Choice ) ( optional, input )

interest_covariate_list: ListOf( Choice ) ( input )

threshold_masking: Choice ( input )

threshold_value: Float ( input )

implicit_mask: Boolean ( input )

explicit_mask: explicit mask for SPM analysis ( optional, input )

spm_workspace_directory: Voxel by voxel comparison SPM workspace directory ( output )

spm_mat: PetSubject PET basicModelMatlabFile ( output )

design_matrix: PetSubject PET MNI DesignMatrix ( output )

design_explore: PetSubject PET MNI DesignExploreFilesAndFactor ( output )

image_type: Choice ( input )

using_t1mri: Boolean ( input )

segmentation_method: Choice ( input )

TPM_template: TPM template ( input )

smooth_fwhm: ListOf( Integer ) ( input )

using_PVC: Boolean ( input )

PVC_method: Choice ( optional, input )

image_intersected_with: Choice ( optional, input )

voi_reference: reference region mask ( optional, input )

voi_reference_intersection: Choice ( input )

contrast: Boolean ( input )

contrast_name: String ( input )

contrast_type: Choice ( input )

contrast_vector: ListOf( Float ) ( input )

result: Boolean ( input )

add_section_overlay: Boolean ( input )

section_image: SPM single subject ( optional, input )

add_render_overlay: Boolean ( input )

render_image: SPM Render ( optional, input )

render_style: Choice ( optional, input )

brightness: Choice ( optional, input )

p_value_multiple_correction: Choice ( input )

p_value: Float ( input )

min_cluster_size: Integer ( input )

results_report: PetSubject PET MNI MaximumIntensityProjection ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : voxelByVoxelAnalysis_spm12

File name : brainvisa/toolboxes/nuclearimaging/processes/voxelByVoxelAnalysis_spm12.py

Supported file formats :

group :

JSON file, JSON file

group_images :

NIFTI-1 image, NIFTI-1 image

group_1 :

JSON file, JSON file

group_1_images :

NIFTI-1 image, NIFTI-1 image

group_2 :

JSON file, JSON file

group_2_images :

NIFTI-1 image, NIFTI-1 image

covariate_table :

CSV file, CSV file

covariate_table_group1 :

CSV file, CSV file

covariate_table_group2 :

CSV file, CSV file

explicit_mask :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

spm_workspace_directory :

Directory, Directory

spm_mat :

Matlab file, Matlab file

design_matrix :

PS file, PS file

design_explore :

PS file, PS file

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

voi_reference :

NIFTI-1 image, NIFTI-1 image

section_image :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

render_image :

Matlab file, Matlab file

results_report :

PS file, PS file