[Volume] Resample

Resampling. Applies a transformation matrix to a volume. Performs linear resampling

Paramètres

Input_Volume: Volume 3D ( entrée )

Source volume

• Volume of U8
• Volume of U16
• Volume of U32
• Volume of S8
• Volume of S16
• Volume of S32
• Volume of FLOAT
• Volume of DOUBLE
• Volume of RGB
• Volume of RGBA

Input_Motion: Transformation matrix ( optional, entrée )

Motion file [default=identity]

Output_Directory: Répertoire ( optional, entrée )

Output_Volume: Volume 3D ( sortie )

Destination volume

• Same type as input

Reference_Volume: Volume 3D ( optional, entrée )

Volume used to define output voxel size and volume dimension (values are overrided by Out_Dim_* and Out_Voxel_*)

Out_Dimension_X: Entier ( optional, input )

X dimension of the output volume (it is not used for resampling computation. Spare voxels are filled with Border_Value)

Out_Dimension_Y: Entier ( optional, input )

Y dimension of the output volume (it is not used for resampling computation. Spare voxels are filled with Border_Value)

Out_Dimension_Z: Entier ( optional, input )

Z dimension of the output volume (it is not used for resampling computation. Spare voxels are filled with Border_Value)

Out_Voxel_X: Réel ( optional, input )

X voxel size of the output volume (it is used for resampling computation.)

Out_Voxel_Y: Réel ( optional, input )

Y voxel size of the output volume (it is used for resampling computation.)

Out_Voxel_Z: Réel ( optional, input )

Z voxel size of the output volume (it is used for resampling computation.)

Resampling_Mode: Choice ( optional, input )

Border_Value: String ( optional, input )

Value to give to spare voxels

Debug_Level: Entier ( optional, input )

Debug traces to print [default=0]

Verbose: Booléen ( optional, input )

Informations techniques

Toolbox : Bioprocessing

Niveau d'utilisateur : 3

Identifiant : BasicResample

Nom de fichier : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/basic/Aims/BasicResample.py

Supported file formats :

Input_Volume :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Motion :

Transformation matrix, Transformation matrix

Output_Directory :

Répertoire, Répertoire

Output_Volume :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

Reference_Volume :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image