Constellation Individual Clusters from atlas pipeline - MRtrix

None

Paramètres

regions_nomenclature: Nomenclature ROIs File ( entrée )

outputs_database: Choice ( input )

study_name: OpenChoice ( input )

method: Choice ( input )

region: OpenChoice ( input )

tractography: Fascicles bundles ( entrée )

apply_weights: Booléen ( input )

weights_file: Fiber weights ( optional, entrée )

dw_to_mesh: Transform T2 Diffusion MR to Raw T1 MRI ( entrée )

individual_white_mesh: White Mesh ( entrée )

regions_parcellation: ROI Texture ( entrée )

atlas_matrix: Matrice de connectivité ( entrée )

filtered_reduced_group_profile: Connectivity ROI Texture ( entrée )

group_clustering: Connectivity ROI Texture ( entrée )

regions_selection: Choice ( input )

keep_regions: ListOf( OpenChoice ) ( input )

min_fibers_length: Réel ( input )

smoothing: Réel ( input )

kmax: Entier ( input )

normalize: Booléen ( input )

erase_smoothed_matrix: Booléen ( input )

complete_individual_matrix: Matrice de connectivité ( sortie )

complete_individual_smoothed_matrix: Matrice de connectivité ( sortie )

reduced_matrix: Matrice de connectivité ( sortie )

individual_clustering: Connectivity ROI Texture ( sortie )

Informations techniques

Toolbox : Constellation

Niveau d'utilisateur : 0

Identifiant : constel_indiv_clusters_from_atlas_pipeline_mrtrix

Nom de fichier : brainvisa/toolboxes/constellation/processes/constel_indiv_clusters_from_atlas_pipeline_mrtrix.py

Supported file formats :

regions_nomenclature :

Text file, Text file

tractography :

Aims bundles, Aims bundles, Mrtrix tracts, Trackvis tracts

weights_file :

Text file, Text file

dw_to_mesh :

Transformation matrix, Transformation matrix

individual_white_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

regions_parcellation :

GIFTI file, GIFTI file, Texture

atlas_matrix :

gz compressed NIFTI-1 image, GIS image, NIFTI-1 image, gz compressed NIFTI-1 image

filtered_reduced_group_profile :

GIFTI file, GIFTI file, Texture

group_clustering :

GIFTI file, GIFTI file, Texture

complete_individual_matrix :

Sparse Matrix, Sparse Matrix

complete_individual_smoothed_matrix :

Sparse Matrix, Sparse Matrix

reduced_matrix :

gz compressed NIFTI-1 image, GIS image, NIFTI-1 image, gz compressed NIFTI-1 image

individual_clustering :

GIFTI file, GIFTI file, Texture