Convert Freesurfer images to nifti format

None

Paramètres

chosen_format: Choice ( input )

raw: RawFreesurferAnat ( optional, entrée )

raw_nifti: RawFreesurferAnat ( optional, sortie )

referential: Referential of Raw T1 MRI ( optional, entrée )

orig: T1 FreesurferAnat ( entrée )

orig_nifti: T1 FreesurferAnat ( sortie )

nu: Nu FreesurferAnat ( entrée )

nu_nifti: Nu FreesurferAnat ( sortie )

ribbon: Ribbon Freesurfer ( entrée )

ribbon_nifti: Ribbon Freesurfer ( sortie )

aseg: Freesurfer aseg ( entrée )

aseg_nifti: Freesurfer aseg ( sortie )

aparc_aseg: Freesurfer Cortical Parcellation ( entrée )

aparc_aseg_nifti: Freesurfer Cortical Parcellation ( sortie )

aparc_a2009s_aseg: Freesurfer Cortical Parcellation ( entrée )

aparc_a2009s_aseg_nifti: Freesurfer Cortical Parcellation ( sortie )

Informations techniques

Toolbox : FreeSurfer

Niveau d'utilisateur : 2

Identifiant : freesurferAnatToNii

Nom de fichier : brainvisa/toolboxes/freesurfer/processes/Tools/freesurferAnatToNii.py

Supported file formats :

raw :

FreesurferMGZ, FreesurferMGZ

raw_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

referential :

Referential, Referential

orig :

FreesurferMGZ, FreesurferMGZ

orig_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

nu :

FreesurferMGZ, FreesurferMGZ

nu_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

ribbon :

FreesurferMGZ, FreesurferMGZ

ribbon_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

aseg :

FreesurferMGZ, FreesurferMGZ

aseg_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

aparc_aseg :

FreesurferMGZ, FreesurferMGZ

aparc_aseg_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

aparc_a2009s_aseg :

FreesurferMGZ, FreesurferMGZ

aparc_a2009s_aseg_nifti :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image