Maillage de la tête

Extraction of the head scalp

Paramètres

t1mri_nobias: IRM T1 Biais Corrigé ( entrée )

histo_analysis: Analyse d'histogramme ( optional, entrée )

head_mesh: Maillage de la tête ( sortie )

Output mesh for the scalp

head_mask: Head Mask ( optional, sortie )

Mask volume of the segmented head. If it is omitted or keep_head_mask is false (which is the default), the mask is not kept in the database: only the mesh is stored in the database.

keep_head_mask: Booléen ( input )

If false, the head mask is not stored into the database

remove_mask: Volume 3D ( optional, entrée )

Mask of voxels to exclude from the segmentation. Useful to manually remove sharp edges induced by artefacts

first_slice: Entier ( optional, input )

Optionally removes a number of sliced at the bottom of the image (where the signam is generally not very contrasted)

threshold: Entier ( optional, input )

By default the threshold is automatically computed from the image histogram

closing: Réel ( optional, input )

threshold_mode: Choice ( input )

Informations techniques

Toolbox : Morphologist

Niveau d'utilisateur : 0

Identifiant : headMesh

Nom de fichier : brainvisa/toolboxes/morphologist/processes/segmentationpipeline/components/headMesh.py

Supported file formats :

t1mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

histo_analysis :

Analyse d'histogramme, Analyse d'histogramme

head_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

head_mask :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

remove_mask :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image