Importation de segmentation MNI CIVET

None

Paramètres

input_raw_t1_mri: Raw T1 MRI ( optional, entrée )

input_bias_corrected: IRM T1 Biais Corrigé ( optional, entrée )

input_brain_mask: T1 Brain Mask ( optional, entrée )

input_grey_white: Grey White Mask ( optional, entrée )

use_civet_segmentations_in_mni_space: Booléen ( input )

input_T1_to_MNI_transformation: MINC transformation matrix ( optional, entrée )

input_white_mesh_left: Maillage de la matière blanche d'un hémisphère ( optional, entrée )

input_white_mesh_right: Maillage de la matière blanche d'un hémisphère ( optional, entrée )

input_pial_mesh_left: Maillage d'un hémisphère ( optional, entrée )

input_pial_mesh_right: Maillage d'un hémisphère ( optional, entrée )

grey_white_classif_from_meshes: Booléen ( input )

output_raw_t1_mri: Raw T1 MRI ( sortie )

output_bias_corrected: IRM T1 Biais Corrigé ( sortie )

output_T1_to_Talairach_transformation: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( optional, sortie )

output_ACPC: Commissure coordinates ( optional, sortie )

output_brain_mask: T1 Brain Mask ( optional, sortie )

output_left_grey_white: Left Grey White Mask ( optional, sortie )

output_right_grey_white: Right Grey White Mask ( optional, sortie )

use_t1pipeline: Choice ( input )

transform_Talairach_to_MNI: Transformation matrix ( entrée )

Informations techniques

Toolbox : Morphologist

Niveau d'utilisateur : 3

Identifiant : importMNIcivetSegmentation

Nom de fichier : brainvisa/toolboxes/morphologist/processes/import/importMNIcivetSegmentation.py

Supported file formats :

input_raw_t1_mri :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_bias_corrected :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_brain_mask :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_grey_white :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_T1_to_MNI_transformation :

MINC transformation matrix, MINC transformation matrix

input_white_mesh_left :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

input_white_mesh_right :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

input_pial_mesh_left :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

input_pial_mesh_right :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

output_raw_t1_mri :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

output_bias_corrected :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

output_T1_to_Talairach_transformation :

Transformation matrix, Transformation matrix

output_ACPC :

Commissure coordinates, Commissure coordinates

output_brain_mask :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

output_left_grey_white :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

output_right_grey_white :

gz compressed NIFTI-1 image, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

transform_Talairach_to_MNI :

Transformation matrix, Transformation matrix