Atlas Registration: Select Evaluation Points

Random selection of evaluation points in the reference image space.

Probabilities of selecting a given point can be weighted by the spatial gradient norm of the input image. This process insure that exactly n points are selected, at the cost of computational complexity.

Description

Figure 1. Points randomly selected with balance in {0, 0.5, 1}, with and without the inclusion of points whose probability was originally (before balancing) null.

Paramètres

input_mri: P:MRI VIP Bias Corrected ( entrée )
Image in which points are selected. In order to minimize deformations of the input image, in Primatologist's framework, the atlas is registered towards the target MRI space. This should thus be the target MRI volume.
input_mask: P:Morpho Skull Stripping Mask ( optional, entrée )
n_points: Entier ( optional, input )
Number of points selected.
balance: Réel ( optional, input )
Modulatory parameter of the probabilities. If 0, probabilities are directly proportional to the norm of the gradient in the image. If 1, all voxels have the same probability of being selected. Any value between 0 and 1 pushes probabilities towards one of these extremities.
include_zero: Booléen ( optional, input )
If false, no point with a null gradient can be selected, even if the balance parameter is not 1.
output_eval_points: P:Evaluation Points Bucket ( sortie )
Output bucket of evaluation points.

Informations techniques

Toolbox : Primatologist

Niveau d'utilisateur : 0

Identifiant : primate_SelectEvalPoints

Nom de fichier : brainvisa/toolboxes/primatologist/processes/blocks/primate_SelectEvalPoints.py

Supported file formats :

input_mri :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
input_mask :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
output_eval_points :
Bucket, Bucket