Referential

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Inheritance graph

Defined in file : brainvisa/types/registration.py

Used in the following processes

compute referentials
extract raw transformation from headers
Import FreeSurfer grey/white segmentation to Morphologist
Import MCRIBS dHCP preterm subject into a brainvisa database
New Referential
Simplified Morphologist 2025
Talairach Transformation From Normalization

Associated formats

Referential

Associated ontology rules

  • brainvisa-3.0 :
    • {protocol}/registration/*
    {protocol}/{subject}/registration/*
  • brainvisa-3.1.0 :
    • {protocol}/registration/*
    {protocol}/{subject}/registration/*
  • brainvisa-3.2.0 :
    • {center}/registration/*
    {center}/{subject}/registration/*
  • morphologist-bids-1.0 :
    • registration/*
    sub-{subject}/ses-{session}/registration/*
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/registration/*
  • shared :
    • registration/*
    models/models_{sulci_database}/descriptive_models/segments/{sulci_segments_model_type}_left/meshes/global_SPAM
    models/models_{sulci_database}/descriptive_models/segments/{sulci_segments_model_type}_left/meshes/white_SPAM

    Key attributes

  • PetPhantom :
    • phantom ,  center ,  acquisition ,  reconstruction
  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition ,  filename_variable
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  filename_variable
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  Study ,  manually_labelled ,  automatically_labelled ,  tracer ,  mapped ,  contrast ,  filename_variable ,  research_group ,  subject_age ,  reconstruction_diameter ,  Template
  • freesurfer :
    • subject
  • freesurfer-bids :
    • subject ,  acquisition
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  filename_variable
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  filename_variable
  • shared :
    • filename_variable ,  sulci_database ,  sulci_segments_model_type