Mesh

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Inheritance graph

Defined in file : brainvisa/types/builtin.py

Used in the following processes

2D Geodesic Texture Smoothing
Aims Mesh Converter
Anatomist Fusion 3D/mesh
Anatomist Show 3D Fusion
Anatomist Show Mesh
Anatomist Show Texture
Average Sulci
Build a Model from a set of subjects
Build a Symmetric Model
Compute Average Mesh From a Set of Subjects
Concatenate both hemisphere meshes
Coordinate Grid Mesh
Create Spherical Mesh Coordinates Textures
Group Watershed
Harmonic Intrinsic Parameterization (HIP) With Multiple Poles Path
Label Texture Boundaries Mesh
Laplacian Mesh Smoothing
Mesh deformation component
Mesh smoothing
PETScanAtlasAnalysis
Project Texture Onto Atlas
Remesh To Atlas
Send Texture To Atlas
Sulci Thickness and Volumes
Talairach grid mesh generator
Texture Mathematic Morphology
Texture Value By Click
Transform mesh between subjects
Transform mesh into the common space

Associated formats

BrainVISA mesh formats
GIFTI file
gz compressed GIFTI file
gz compressed MESH mesh
gz compressed MNI OBJ mesh
gz compressed PLY mesh
gz compressed TRI mesh
MESH mesh
MNI OBJ mesh
PLY mesh
Texture
TRI mesh
Z compressed GIFTI file
Z compressed MESH mesh
Z compressed MNI OBJ mesh
Z compressed PLY mesh
Z compressed TRI mesh

Associated ontology rules

  • brainvisa-3.0 :
  • {protocol}/{subject}/tri/*
    {protocol}/{subject}/mesh/*
    {protocol}/{subject}/mesh/{acquisition}/*
  • brainvisa-3.1.0 :
  • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/mesh/*
  • brainvisa-3.2.0 :
  • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/mesh/*
    {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/mesh/*
  • morphologist-bids-1.0 :
  • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/segmentation/mesh/*
  • shared :
  • standardmeshes/*

    Key attributes

  • brainvisa-3.0 :
  • protocol ,  subject ,  sulcus_name ,  side ,  acquisition ,  filename_variable
  • brainvisa-3.1.0 :
  • protocol ,  subject ,  sulcus_name ,  side ,  acquisition ,  analysis ,  filename_variable
  • brainvisa-3.2.0 :
  • Study ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  origin_subject ,  Template ,  manually_labelled ,  automatically_labelled ,  center ,  sulcus_name ,  side ,  time_duration ,  acquisition_date ,  time_point ,  rescan ,  contrast ,  mapped ,  modality ,  inflated ,  filename_variable
  • flat :
  • side
  • freesurfer :
  • subject ,  side ,  inflated ,  time_sequence
  • freesurfer-bids :
  • subject ,  acquisition ,  side ,  inflated ,  time_sequence
  • morphologist-bids-1.0 :
  • time_duration ,  acquisition_date ,  time_point ,  rescan ,  subject ,  session ,  acquisition ,  analysis ,  side ,  filename_variable
  • shared :
  • filename_variable ,  side ,  icosphere_type ,  vertices ,  sulci_database ,  sulci_segments_model_type