existing QApplication: 0
create qapp
done
Starting Anatomist.....
config file : /home/a-sac-ns-brainvisa/.anatomist/config/settings.cfg
global modules: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/share/anatomist-6.0/python_plugins
home   modules: /home/a-sac-ns-brainvisa/.anatomist/python_plugins
loading module statsplotwindow
loading module gltf_io
loading module valuesplotwindow
loading module anacontrolmenu
loading module ana_image_math
loading module histogram
loading module modelGraphs
loading module infowindow
loading module volumepalettes
loading module profilewindow
loading module simple_controls
loading module gradientpalette
loading module bundles_small_brains
loading module bsa_proba
loading module paletteViewer
loading module selection
loading module foldsplit
loading module bundles_split_by_cortical_regions
loading module meshsplit
loading module measure
loading module save_resampled
loading module palettecontrols
all python modules loaded
Anatomist started.
usage: /home_local/a-sac-ns-brainvisa/bbi-daily/brainvisa-web/build/bin/ana_atlas_nonlin.py
       [-h] [-s] [object_file ...]

Run Anatomist with a ROI navigation control with the following features: *
Linked cursor between windows with non-linear deformation fields: non-linear
transformations can be loaded between referentials which are not linked via
regulart affine transformations. Clicks coordinates are transformed and sent
to other windows. * ROI selection: selectionned objects (double-click) are
handled by their name/label, then all objects with the same name/label are
also selected in all views. Views are focused on the bounding box of the
selected objects. The specified objects are loaded at launch time, and any
.yaml file is interpreted as a transformations graph. Non-linear
transformations (vector fields) between MNI152 2009c asymmetric, Colin27,
BigBrain and an infant atlas templates can be downloaded from the Human Brain
Project (HBP) knowledge graph: https://search.kg.ebrains.eu/instances/Dataset/
7a9aa738-a5b2-4601-818e-05db2627ba5c A transformations graph (graph.yaml) is
also found in this dataset and may be passed to this program. The
corresponding atlases templates can be downloaded using the links there.
However to work correctly the template images have to be marked with the
correct referentials IDs. The ICBM152 template is already marked, but others
must be added a .minf file (text file): - for Colin27: create
colin27_t1_tal_lin.nii.minf: attributes = { "referentials": ["ID: MNI Colin
27"], } - for the BigBrain, the referential is "Big Brain (Histology)" - for
the infants template the referential is "Infant atlas"

positional arguments:
  object_file  Load objects or transformation graph (.yaml)

options:
  -h, --help   show this help message and exit
  -s, --split  use separate windows (default: use a views block)
PyAnatomist Module present
PythonLauncher::runModules()