Quantification: multiple 3D hierarchical analysis pipeline

None

Parameters

Input_ListOf_3dImage: ListOf( 3D Volume ) ( input )

Input_3dImage_ROI: 3D Volume ( input )

Input_Hierarchy: Hierarchy ( optional, input )

Volume: Boolean ( input )

Percent_Amount_Of_Staining: Boolean ( input )

Output_Directory: Directory ( optional, output )

Output_ListOf_Csv: ListOf( CSV file ) ( output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : MultipleVolume3DHierarchicalStatisticGeneration

File name : brainvisa/toolboxes/brainrat/processes/pmianalysis/MultipleVolume3DHierarchicalStatisticGeneration.py

Supported file formats :

Input_ListOf_3dImage :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_3dImage_ROI :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Hierarchy :

Hierarchy, Hierarchy

Output_Directory :

Directory, Directory

Output_ListOf_Csv :

CSV file, CSV file