:orphan:

PyAnatomist examples
====================



.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loading and viewing a Volume with anatomist">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_volumetest_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_volumetest.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Volume manipulation</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Selecting graph nodes according a nomenclature">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_nomenclatureselection_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_nomenclatureselection.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Selection by nomenclature</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loading and displaying a graph">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_graph_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_graph.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Graph manipulation</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Catching click events and plugging a callback">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_events_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_events.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Events handling</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Using the commands interpreter in a generic way">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_customcommands_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_customcommands.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Anatomist commands</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Adding custom menus in an object options">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_addMenuEntry_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_addMenuEntry.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Adding custom menus in an object options</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Fusion3D (mesh + texture from a volume) in Anatomist">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_fusion3D_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_fusion3D.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Fusion3D example</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Getting selected objects">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_selection_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_selection.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Selection handling</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Activate actions in the current control of a window.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_activateaction_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_activateaction.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Action activation triggering API demo</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Creating a complete graph and nomenclature in Python">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_graph_building_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_graph_building.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Graph building</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to use Anatomist from a BrainVisa process, and get events from Anatomist...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_bvProcessSocket_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_bvProcessSocket.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Using PyAnatomist in BrainVisa</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loading, handling and viewing a Volume with aims and anatomist">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_aimsvolumetest_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_aimsvolumetest.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">AIMS / Anatomist volume manipulation</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Using a mesh and modifying it while it is displayed">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_meshtest_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_meshtest.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Mesh manipulation</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Subclassing Anatomist objects">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_sphere_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_sphere.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Sphere example</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Creating a new custom fusion type in Anatomist">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_fusion_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_fusion.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Custom fusion example</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Updating the size and shape of an object interactively">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_ellipsoid_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_ellipsoid.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Ellipsoid example</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Plugging new conrols / actions in Anatomist views">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_control_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_control.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Custom controls example</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Display graph labels as 3D text annotations. This code is somewhat equivalent to what happens u...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_anagraphannotate_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_anagraphannotate.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">3D Text annotations on a graph</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Customizing OpenGL parameters for objects">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_customopenglobject_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_customopenglobject.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Using OpenGL in PyAnatomist</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Complete example with a specific graphical interface that embeds an Anatomist window and a matp...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_volumeMeasures_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_volumeMeasures.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Measurements on a volume</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="An even simplified version of the anasimpleviewer application, which may also be used as a prog...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_anaevensimplerviewer_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_anaevensimplerviewer.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Build a custom simplified viewer based on Anatomist</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Drawing ROI on a mesh in a texture. Of course the SurfPaint module allows to do  it with much r...">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_texturedrawing_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_texturedrawing.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Texture drawing</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example uses data of i2bm platform.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_anatomistapiTests_thumb.png
    :alt:

  :ref:`sphx_glr_auto_examples_anatomistapiTests.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Anatomist api tests</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/volumetest
   /auto_examples/nomenclatureselection
   /auto_examples/graph
   /auto_examples/events
   /auto_examples/customcommands
   /auto_examples/addMenuEntry
   /auto_examples/fusion3D
   /auto_examples/selection
   /auto_examples/activateaction
   /auto_examples/graph_building
   /auto_examples/bvProcessSocket
   /auto_examples/aimsvolumetest
   /auto_examples/meshtest
   /auto_examples/sphere
   /auto_examples/fusion
   /auto_examples/ellipsoid
   /auto_examples/control
   /auto_examples/anagraphannotate
   /auto_examples/customopenglobject
   /auto_examples/volumeMeasures
   /auto_examples/anaevensimplerviewer
   /auto_examples/texturedrawing
   /auto_examples/anatomistapiTests


.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_