.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/volumetest.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        Click :ref:`here <sphx_glr_download_auto_examples_volumetest.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_volumetest.py:


Volume manipulation
-------------------

Loading and viewing a Volume with anatomist

.. GENERATED FROM PYTHON SOURCE LINES 39-66




.. rst-class:: sphx-glr-script-out

 Out:

 .. code-block:: none

    object and window are not deletable since there is a reference on it. Execute 'del win' and 'del avol' to delete them.






|

.. code-block:: default


    from __future__ import print_function

    from __future__ import absolute_import
    import anatomist.api as anatomist  # works with all implementations

    # initialize Anatomist
    a = anatomist.Anatomist()

    # load a volume in anatomist
    avol = a.loadObject('irm.ima')

    win = a.createWindow('Axial')

    # put volume in window
    a.addObjects([avol], [win])

    # change palette
    avol.setPalette('Blue-Red-fusion')

    print("object and window are not deletable since there is a reference on it. Execute 'del win' and 'del avol' to delete them.")

    # display in matplotlib for sphinx_gallery
    win.sphinx_gallery_snapshot()
    import sys
    if 'sphinx_gallery' in sys.modules:
        del win, avol


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** ( 0 minutes  1.887 seconds)


.. _sphx_glr_download_auto_examples_volumetest.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download sphx-glr-download-python

     :download:`Download Python source code: volumetest.py <volumetest.py>`



  .. container:: sphx-glr-download sphx-glr-download-jupyter

     :download:`Download Jupyter notebook: volumetest.ipynb <volumetest.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_