:orphan:



.. _sphx_glr_auto_examples:

PyAnatomist examples
====================



.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loading and viewing a Volume with anatomist ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_volumetest_thumb.png

        :ref:`sphx_glr_auto_examples_volumetest.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/volumetest

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Selecting graph nodes according a nomenclature ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_nomenclatureselection_thumb.png

        :ref:`sphx_glr_auto_examples_nomenclatureselection.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/nomenclatureselection

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loading and displaying a graph ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_graph_thumb.png

        :ref:`sphx_glr_auto_examples_graph.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/graph

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Catching click events and plugging a callback ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_events_thumb.png

        :ref:`sphx_glr_auto_examples_events.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/events

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Using the commands interpreter in a generic way ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_customcommands_thumb.png

        :ref:`sphx_glr_auto_examples_customcommands.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/customcommands

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Adding custom menus in an object options">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_addMenuEntry_thumb.png

        :ref:`sphx_glr_auto_examples_addMenuEntry.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/addMenuEntry

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Getting selected objects ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_selection_thumb.png

        :ref:`sphx_glr_auto_examples_selection.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/selection

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Fusion3D (mesh + texture from a volume) in Anatomist ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_fusion3D_thumb.png

        :ref:`sphx_glr_auto_examples_fusion3D.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/fusion3D

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to use Anatomist from a BrainVisa process, and get events from Anatomist...">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_bvProcessSocket_thumb.png

        :ref:`sphx_glr_auto_examples_bvProcessSocket.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/bvProcessSocket

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Creating a complete graph and nomenclature in Python ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_graph_building_thumb.png

        :ref:`sphx_glr_auto_examples_graph_building.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/graph_building

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Loading, handling and viewing a Volume with aims and anatomist ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_aimsvolumetest_thumb.png

        :ref:`sphx_glr_auto_examples_aimsvolumetest.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/aimsvolumetest

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Using a mesh and modifying it while it is displayed ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_meshtest_thumb.png

        :ref:`sphx_glr_auto_examples_meshtest.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/meshtest

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Subclassing Anatomist objects ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_sphere_thumb.png

        :ref:`sphx_glr_auto_examples_sphere.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/sphere

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Creating a new custom fusion type in Anatomist ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_fusion_thumb.png

        :ref:`sphx_glr_auto_examples_fusion.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/fusion

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Updating the size and shape of an object interactively ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_ellipsoid_thumb.png

        :ref:`sphx_glr_auto_examples_ellipsoid.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/ellipsoid

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Example script with invalid Python syntax ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_activateaction_thumb.png

        :ref:`sphx_glr_auto_examples_activateaction.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/activateaction

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Plugging new conrols / actions in Anatomist views ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_control_thumb.png

        :ref:`sphx_glr_auto_examples_control.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/control

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Display graph labels as 3D text annotations. This code is somewhat equivalent to what happens u...">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_anagraphannotate_thumb.png

        :ref:`sphx_glr_auto_examples_anagraphannotate.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/anagraphannotate

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Customizing OpenGL parameters for objects ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_customopenglobject_thumb.png

        :ref:`sphx_glr_auto_examples_customopenglobject.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/customopenglobject

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Complete example with a specific graphical interface that embeds an Anatomist window and a matp...">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_volumeMeasures_thumb.png

        :ref:`sphx_glr_auto_examples_volumeMeasures.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/volumeMeasures

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="An even simplified version of the anasimpleviewer application, which may also be used as a prog...">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_anaevensimplerviewer_thumb.png

        :ref:`sphx_glr_auto_examples_anaevensimplerviewer.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/anaevensimplerviewer

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="Drawing ROI on a mesh in a texture. Of course the SurfPaint module allows to do  it with much r...">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_texturedrawing_thumb.png

        :ref:`sphx_glr_auto_examples_texturedrawing.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/texturedrawing

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example uses data of i2bm platform. ">

.. only:: html

    .. figure:: /auto_examples/images/thumb/sphx_glr_anatomistapiTests_thumb.png

        :ref:`sphx_glr_auto_examples_anatomistapiTests.py`

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/anatomistapiTests
.. raw:: html

    <div style='clear:both'></div>



.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-gallery


  .. container:: sphx-glr-download

    :download:`Download all examples in Python source code: auto_examples_python.zip <//casa/host/src/anatomist/anatomist-gpl/5.0/pyanatomist/doc/sphinx/auto_examples/auto_examples_python.zip>`



  .. container:: sphx-glr-download

    :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip <//casa/host/src/anatomist/anatomist-gpl/5.0/pyanatomist/doc/sphinx/auto_examples/auto_examples_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.readthedocs.io>`_