freesurfer

AimsBothInflatedWhite

Parent types:
AimsInflatedWhite
AimsWhite
White Mesh
Mesh
Any Type

Key: ['subject', 'time_sequence']
Rules selection key: ['time_sequence'] []
{subject}/surf/bh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('No',) ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/bh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: -10
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/bh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/bh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('Yes',) ()
Priority offset: -10
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

AimsBothPial
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject']
{subject}/surf/bh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsBothWhite
Parent types:
AimsWhite
White Mesh
Mesh
Any Type

Key: ['subject']
{subject}/surf/bh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsInflatedWhite
Parent types:
AimsWhite
White Mesh
Mesh
Any Type

Key: ['subject', 'side', 'time_sequence']
Rules selection key: ['side', 'time_sequence'] []

{subject}/surf/lh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'No') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/rh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'No') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/lh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/rh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/lh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/rh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/lh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', '') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/lh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', '') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/lh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', 'No') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/rh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', '') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/rh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', '') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/rh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', 'No') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/lh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', 'Yes') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/lh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'Yes') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/rh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'Yes') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/rh.r.aims.white.inflated_sequence

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', 'Yes') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

AimsInflatedWhiteCurvTex
Parent types:
ResampledDataTexture
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.curv.white.inflated

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.curv.white.inflated

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv.white.inflated

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv.white.inflated

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsNativePial
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

AimsNativeWhite
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

AimsNormalizedWhite
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.aims.white.normalized

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.aims.white.normalized

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.white.normalized

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.white.normalized

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsPial
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsWhite
Parent types:
White Mesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 10
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 10
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 10
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 10
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AverageBrainWhite
Parent types:
AimsWhite
White Mesh
Mesh
Any Type

Key: ['freesurfer_group_of_subjects', 'side']
Rules selection key: ['side'] []
group_analysis/{freesurfer_group_of_subjects}/average_brain/lh.averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/lh.averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/rh.averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/rh.averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BaseFreesurferType
Parent types:
FreesurferType
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh

Formats: None
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'

{subject}/surf/lh

Formats: None
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'

{subject}/surf/rh

Formats: None
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'

{subject}/surf/rh

Formats: None
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'

BothAverageBrainWhite
Parent types:
AverageBrainWhite
AimsWhite
White Mesh
Mesh
Any Type

Key: ['freesurfer_group_of_subjects', 'inflated']
Rules selection key: ['inflated'] []
group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('No',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('Yes',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BothAverageResampledGyri
Parent types:
ResampledGyri
FreesurferResampledParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['freesurfer_group_of_subjects']
group_analysis/{freesurfer_group_of_subjects}/average_brain/bh.annot.averagebrain

Formats: 'BrainVISA texture formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BothResampledGyri
Parent types:
ResampledGyri
FreesurferResampledParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject']
{subject}/label/bh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BothResampledSulciGyri
Parent types:
ResampledSulciGyri
FreesurferResampledParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject']
{subject}/label/bh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BrainVISA session event
Parent types:
Any Type

Key: ['filename_variable']
history_book/bvsession/*

Formats: ['BrainVISA session event']
Rule selection key: () ()
Priority offset: 0

Bvsession
Parent types:
Any Type

Key: []
history_book/bvsession

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

Cortical Thicknesses Table
Parent types:
Numerical Table
CSV file
Text file
Any Type

Key: []
tables/thicknesses_freesurfer

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Database Cache file
Parent types:
Any Type

Key: ['filename_variable']
*

Formats: ['Database Cache file', 'SQLite Database File']
Rule selection key: () ()
Priority offset: 0

Database description page
Parent types:
HTML file
Any Type

Key: []
database_fso

Formats: ['HTML']
Rule selection key: () ()
Priority offset: 0

Database settings
Parent types:
Text file
Any Type

Key: []
database_settings

Formats: ['Minf']
Rule selection key: () ()
Priority offset: 0

Freesurfer Anat To Meshes Transformation
Parent types:
Transformation
Any Type

Key: ['subject']
{subject}/mri/transforms/<subject>_orig_TO_meshes

Formats: None
Rule selection key: () ()
Priority offset: 0

Freesurfer Brain Mask
Parent types:
Label volume
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/brainmask

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Freesurfer Cortical Parcellation using Destrieux Atlas
Parent types:
Label volume
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/aparc.a2009s+aseg

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Freesurfer Group definition
Parent types:
Group definition
XML parameters
Text file
Any Type

Key: ['freesurfer_group_of_subjects']
group_analysis/{freesurfer_group_of_subjects}/<freesurfer_group_of_subjects>_group

Formats: ['XML']
Rule selection key: () ()
Priority offset: 0

Freesurfer Scanner To MNI Transformation
Parent types:
Transformation
Any Type

Key: ['subject']
{subject}/mri/transforms/<subject>_scanner_to_mni

Formats: None
Rule selection key: () ()
Priority offset: 0

Freesurfer aseg
Parent types:
Label volume
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/aseg

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

FreesurferAvgCurvType
Parent types:
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferCurvPialType
Parent types:
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferCurvType
Parent types:
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferGyri
Parent types:
FreesurferParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/label/lh.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferGyriTexture
Parent types:
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/label/lh.aparc

Formats: ['FreesurferParcellation']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc

Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc

Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc

Formats: ['FreesurferParcellation']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferParcellationPath
Parent types:
FreesurferType
Any Type

Key: ['subject']
{subject}/label

Formats: None
Rule selection key: () ()
Priority offset: 0

FreesurferSulciGyri
Parent types:
FreesurferParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/label/lh.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferSulciGyriTexture
Parent types:
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/label/lh.aparc.a2009s

Formats: ['FreesurferParcellation']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc.a2009s

Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.a2009s

Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.a2009s

Formats: ['FreesurferParcellation']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferThicknessType
Parent types:
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

Global Volumetry Table
Parent types:
Numerical Table
CSV file
Text file
Any Type

Key: []
tables/tissues_volumes_freesurfer

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

History Cortical Thicknesses Table
Parent types:
Text file
Any Type

Key: []
tables/history_thicknesses_freesurfer

Formats: None
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

History Global Volumetry Table
Parent types:
Text file
Any Type

Key: []
tables/history_tissues_volumes_freesurfer

Formats: None
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Nu FreesurferAnat
Parent types:
T1 FreesurferAnat
FreesurferAnat
T1 MRI
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/nu

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Pial
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

Process execution event
Parent types:
Any Type

Key: ['filename_variable']
history_book/*/*

Formats: ['Process execution event']
Rule selection key: () ()
Priority offset: 0

RawFreesurferAnat
Parent types:
FreesurferAnat
T1 MRI
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/orig/001

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Referential of Pial
Parent types:
Referential
Text file
Any Type

Key: ['subject']
{subject}/mri/transforms/<subject>_meshes

Formats: ['Referential']
Rule selection key: () ()
Priority offset: 0

Referential of Raw T1 MRI
Parent types:
Referential
Text file
Any Type

Key: ['subject']
{subject}/mri/orig/001

Formats: ['Referential']
Rule selection key: () ()
Priority offset: 0

ResampledFreesurferAvgCurvType
Parent types:
ResampledDataTexture
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledFreesurferCurvPialType
Parent types:
ResampledDataTexture
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledFreesurferCurvType
Parent types:
ResampledDataTexture
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledFreesurferThicknessType
Parent types:
ResampledDataTexture
DataTexture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledGyri
Parent types:
FreesurferResampledParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/label/lh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/lh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/rh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/rh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledPial
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledSulciGyri
Parent types:
FreesurferResampledParcellationType
ROI Texture
Label Texture
Texture
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/label/lh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/lh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/rh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/rh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledWhite
Parent types:
White Mesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.r.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

Ribbon Freesurfer
Parent types:
Label volume
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/ribbon

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Scanner Based Referential
Parent types:
Referential
Text file
Any Type

Key: ['subject']
{subject}/mri/transforms/orig_<subject>_Scanner_Based

Formats: ['Referential']
Rule selection key: () ()
Priority offset: 0

Snapshot Curvature Map
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
snapshots/freesurfer/curv/snapshot_freesurfer_left_curv_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/curv/snapshot_freesurfer_left_curv_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/curv/snapshot_freesurfer_right_curv_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/curv/snapshot_freesurfer_right_curv_{subject}

Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot Grey White
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject']
snapshots/freesurfer/greywhite/snapshot_freesurfer_greywhite_{subject}

Formats: ['PNG image']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Snapshot Gyral Parcellation
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
snapshots/freesurfer/gyri/snapshot_freesurfer_left_gyri_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/gyri/snapshot_freesurfer_left_gyri_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/gyri/snapshot_freesurfer_right_gyri_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/gyri/snapshot_freesurfer_right_gyri_{subject}

Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot Meshcut
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject']
snapshots/freesurfer/meshcut/snapshot_freesurfer_meshcut_{subject}

Formats: ['PNG image']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Snapshot Pial Mesh
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
snapshots/freesurfer/aimspial/snapshot_freesurfer_left_aimspial_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/aimspial/snapshot_freesurfer_left_aimspial_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/aimspial/snapshot_freesurfer_right_aimspial_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/aimspial/snapshot_freesurfer_right_aimspial_{subject}

Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot Thickness Map
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
snapshots/freesurfer/thickness/snapshot_freesurfer_left_thickness_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/thickness/snapshot_freesurfer_left_thickness_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/thickness/snapshot_freesurfer_right_thickness_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/thickness/snapshot_freesurfer_right_thickness_{subject}

Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot White Mesh
Parent types:
Snapshot
2D Image
3D Volume
4D Volume
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
snapshots/freesurfer/aimswhite/snapshot_freesurfer_left_aimswhite_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/aimswhite/snapshot_freesurfer_left_aimswhite_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/aimswhite/snapshot_freesurfer_right_aimswhite_{subject}

Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/aimswhite/snapshot_freesurfer_right_aimswhite_{subject}

Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshots Dir
Parent types:
Directory
Any Type

Key: []
snapshots

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

Snapshots Features Table
Parent types:
Numerical Table
CSV file
Text file
Any Type

Key: []
tables/snapshots_features_freesurfer

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Snapshots Grey White Quality Scores
Parent types:
CSV file
Text file
Any Type

Key: []
snapshots/freesurfer/greywhite/qc_greywhite

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

SphereReg
Parent types:
FreesurferMesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.sphere.reg

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'

{subject}/surf/lh.sphere.reg

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'

{subject}/surf/rh.sphere.reg

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'

{subject}/surf/rh.sphere.reg

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'

Subject
Parent types:
Any Type

Key: ['subject']
{subject}

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

T1 FreesurferAnat
Parent types:
FreesurferAnat
T1 MRI
3D Volume
4D Volume
Any Type

Key: ['subject']
{subject}/mri/orig

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Tables Directory
Parent types:
Directory
Any Type

Key: []
tables

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

Talairach Auto Freesurfer
Parent types:
MINC transformation matrix
Any Type

Key: ['subject']
{subject}/mri/transforms/talairach.auto

Formats: ['MINC transformation matrix']
Rule selection key: () ()
Priority offset: 0

Transformation to Scanner Based Referential
Parent types:
Transformation matrix
Transformation
Any Type

Key: ['subject']
{subject}/mri/transforms/orig_<subject>_TO_Scanner_Based

Formats: ['Transformation matrix', 'Matlab file']
Rule selection key: () ()
Priority offset: 0

White
Parent types:
White Mesh
Mesh
Any Type

Key: ['subject', 'side']
Rules selection key: ['side'] []
{subject}/surf/lh.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'