freesurfer

AimsBothInflatedWhite

Parent types:
AimsInflatedWhite

AimsWhite

White Mesh

Mesh

Any Type

Key: ['subject', 'time_sequence']

Rules selection key: ['time_sequence'] []

{subject}/surf/bh.r.aims.white.inflated

Formats: 'BrainVISA mesh formats'
Rule selection key: ('No',) ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/bh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: -10
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'
{subject}/surf/bh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/bh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('Yes',) ()
Priority offset: -10
side = 'both'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

AimsBothPial

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject']

{subject}/surf/bh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsBothWhite

Parent types:
AimsWhite

White Mesh

Mesh

Any Type

Key: ['subject']

{subject}/surf/bh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsInflatedWhite

Parent types:
AimsWhite

White Mesh

Mesh

Any Type

Key: ['subject', 'side', 'time_sequence']

Rules selection key: ['side', 'time_sequence'] []


{subject}/surf/lh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'No') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'
{subject}/surf/rh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'No') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'


{subject}/surf/lh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'
{subject}/surf/rh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'
{subject}/surf/lh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'
{subject}/surf/rh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', '') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'


{subject}/surf/lh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', '') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'
{subject}/surf/lh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', '') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/lh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', 'No') ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/rh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', '') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'
{subject}/surf/rh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', '') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'

{subject}/surf/rh.r.aims.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', 'No') ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'No'
{subject}/surf/lh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('left', 'Yes') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/lh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'Yes') ()
Priority offset: -10
side = 'left'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'
{subject}/surf/rh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('', 'Yes') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

{subject}/surf/rh.r.aims.white.inflated_sequence
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right', 'Yes') ()
Priority offset: -10
side = 'right'
averaged = 'No'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
time_sequence = 'Yes'

AimsInflatedWhiteCurvTex

Parent types:
ResampledDataTexture

DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.curv.white.inflated

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.curv.white.inflated
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.curv.white.inflated
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv.white.inflated
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsNativePial

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.aims.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'
{subject}/surf/rh.aims.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.aims.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

AimsNativeWhite

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.aims.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'
{subject}/surf/rh.aims.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.aims.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

AimsNormalizedWhite

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.aims.white.normalized

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.aims.white.normalized
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.aims.white.normalized
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.white.normalized
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsPial

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.aims.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.aims.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.aims.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AimsWhite

Parent types:
White Mesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.aims.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 10
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.aims.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 10
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.aims.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 10
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.aims.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 10
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

AverageBrainWhite

Parent types:
AimsWhite

White Mesh

Mesh

Any Type

Key: ['freesurfer_group_of_subjects', 'side']

Rules selection key: ['side'] []

group_analysis/{freesurfer_group_of_subjects}/average_brain/lh.averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/lh.averagebrain.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
group_analysis/{freesurfer_group_of_subjects}/average_brain/rh.averagebrain.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/rh.averagebrain.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BaseFreesurferType

Parent types:
FreesurferType

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh

Formats: None
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'

{subject}/surf/lh
Formats: None
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
{subject}/surf/rh
Formats: None
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'

{subject}/surf/rh
Formats: None
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'

BothAverageBrainWhite

Parent types:
AverageBrainWhite

AimsWhite

White Mesh

Mesh

Any Type

Key: ['freesurfer_group_of_subjects', 'inflated']

Rules selection key: ['inflated'] []

group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('No',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

group_analysis/{freesurfer_group_of_subjects}/average_brain/averagebrain.white.inflated
Formats: 'BrainVISA mesh formats'
Rule selection key: ('Yes',) ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
inflated = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BothAverageResampledGyri

Parent types:
ResampledGyri

FreesurferResampledParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['freesurfer_group_of_subjects']

group_analysis/{freesurfer_group_of_subjects}/average_brain/bh.annot.averagebrain

Formats: 'BrainVISA texture formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'Yes'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BothResampledGyri

Parent types:
ResampledGyri

FreesurferResampledParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['subject']

{subject}/label/bh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BothResampledSulciGyri

Parent types:
ResampledSulciGyri

FreesurferResampledParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['subject']

{subject}/label/bh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: () ()
Priority offset: 0
side = 'both'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

BrainVISA session event

Parent types:
Any Type

Key: ['filename_variable']

history_book/bvsession/*

Formats: ['BrainVISA session event']
Rule selection key: () ()
Priority offset: 0

Bvsession

Parent types:
Any Type

Key: []

history_book/bvsession

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

Cortical Thicknesses Table

Parent types:
Numerical Table

CSV file

Text file

Any Type

Key: []

tables/thicknesses_freesurfer

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Database Cache file

Parent types:
Any Type

Key: ['filename_variable']

*

Formats: ['Database Cache file', 'SQLite Database File']
Rule selection key: () ()
Priority offset: 0

Database description page

Parent types:
HTML file

Any Type

Key: []

database_fso

Formats: ['HTML']
Rule selection key: () ()
Priority offset: 0

Database settings

Parent types:
Text file

Any Type

Key: []

database_settings

Formats: ['Minf']
Rule selection key: () ()
Priority offset: 0

Freesurfer Anat To Meshes Transformation

Parent types:
Transformation

Any Type

Key: ['subject']

{subject}/mri/transforms/<subject>_orig_TO_meshes

Formats: None
Rule selection key: () ()
Priority offset: 0

Freesurfer Brain Mask

Parent types:
Label volume

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/brainmask

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Freesurfer Cortical Parcellation using Destrieux Atlas

Parent types:
Label volume

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/aparc.a2009s+aseg

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Freesurfer Group definition

Parent types:
Group definition

XML parameters

Text file

Any Type

Key: ['freesurfer_group_of_subjects']

group_analysis/{freesurfer_group_of_subjects}/<freesurfer_group_of_subjects>_group

Formats: ['XML']
Rule selection key: () ()
Priority offset: 0

Freesurfer Scanner To MNI Transformation

Parent types:
Transformation

Any Type

Key: ['subject']

{subject}/mri/transforms/<subject>_scanner_to_mni

Formats: None
Rule selection key: () ()
Priority offset: 0

Freesurfer aseg

Parent types:
Label volume

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/aseg

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

FreesurferAvgCurvType

Parent types:
DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.avg_curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/surf/rh.avg_curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.avg_curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferCurvPialType

Parent types:
DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.curv.pial
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/surf/rh.curv.pial
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.curv.pial
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferCurvType

Parent types:
DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/surf/rh.curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferGyri

Parent types:
FreesurferParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/label/lh.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/label/rh.aparc.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferGyriTexture

Parent types:
ROI Texture

Label Texture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/label/lh.aparc

Formats: ['FreesurferParcellation']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc
Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/label/rh.aparc
Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc
Formats: ['FreesurferParcellation']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferParcellationPath

Parent types:
FreesurferType

Any Type

Key: ['subject']

{subject}/label

Formats: None
Rule selection key: () ()
Priority offset: 0

FreesurferSulciGyri

Parent types:
FreesurferParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/label/lh.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc.a2009s.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/label/rh.aparc.a2009s.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.a2009s.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferSulciGyriTexture

Parent types:
ROI Texture

Label Texture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/label/lh.aparc.a2009s

Formats: ['FreesurferParcellation']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/lh.aparc.a2009s
Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/label/rh.aparc.a2009s
Formats: ['FreesurferParcellation']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/label/rh.aparc.a2009s
Formats: ['FreesurferParcellation']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

FreesurferThicknessType

Parent types:
DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/lh.thickness
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'No'
{subject}/surf/rh.thickness
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

{subject}/surf/rh.thickness
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'No'

Global Volumetry Table

Parent types:
Numerical Table

CSV file

Text file

Any Type

Key: []

tables/tissues_volumes_freesurfer

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

History Cortical Thicknesses Table

Parent types:
Text file

Any Type

Key: []

tables/history_thicknesses_freesurfer

Formats: None
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

History Global Volumetry Table

Parent types:
Text file

Any Type

Key: []

tables/history_tissues_volumes_freesurfer

Formats: None
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Nu FreesurferAnat

Parent types:
T1 FreesurferAnat

FreesurferAnat

T1 MRI

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/nu

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Pial

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'
{subject}/surf/rh.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

Process execution event

Parent types:
Any Type

Key: ['filename_variable']

history_book/*/*

Formats: ['Process execution event']
Rule selection key: () ()
Priority offset: 0

RawFreesurferAnat

Parent types:
FreesurferAnat

T1 MRI

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/orig/001

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Referential of Pial

Parent types:
Referential

Text file

Any Type

Key: ['subject']

{subject}/mri/transforms/<subject>_meshes

Formats: ['Referential']
Rule selection key: () ()
Priority offset: 0

Referential of Raw T1 MRI

Parent types:
Referential

Text file

Any Type

Key: ['subject']

{subject}/mri/orig/001

Formats: ['Referential']
Rule selection key: () ()
Priority offset: 0

ResampledFreesurferAvgCurvType

Parent types:
ResampledDataTexture

DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.avg_curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.avg_curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.avg_curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.avg_curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledFreesurferCurvPialType

Parent types:
ResampledDataTexture

DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.curv.pial

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.curv.pial
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.curv.pial
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv.pial
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledFreesurferCurvType

Parent types:
ResampledDataTexture

DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.curv

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.curv
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledFreesurferThicknessType

Parent types:
ResampledDataTexture

DataTexture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.thickness

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.thickness
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.thickness
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.thickness
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledGyri

Parent types:
FreesurferResampledParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/label/lh.r.aparc.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/lh.r.aparc.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/label/rh.r.aparc.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/rh.r.aparc.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledPial

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.pial

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.pial
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledSulciGyri

Parent types:
FreesurferResampledParcellationType

ROI Texture

Label Texture

Texture

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/label/lh.r.aparc.a2009s.annot

Formats: 'BrainVISA texture formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/lh.r.aparc.a2009s.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/label/rh.r.aparc.a2009s.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/label/rh.r.aparc.a2009s.annot
Formats: 'BrainVISA texture formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

ResampledWhite

Parent types:
White Mesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.r.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/lh.r.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'
{subject}/surf/rh.r.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

{subject}/surf/rh.r.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'Yes'
vertex_corr_method = 'freesurfer'

Ribbon Freesurfer

Parent types:
Label volume

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/ribbon

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Scanner Based Referential

Parent types:
Referential

Text file

Any Type

Key: ['subject']

{subject}/mri/transforms/orig_<subject>_Scanner_Based

Formats: ['Referential']
Rule selection key: () ()
Priority offset: 0

Snapshot Curvature Map

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

snapshots/freesurfer/curv/snapshot_freesurfer_left_curv_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/curv/snapshot_freesurfer_left_curv_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'
snapshots/freesurfer/curv/snapshot_freesurfer_right_curv_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/curv/snapshot_freesurfer_right_curv_{subject}
Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot Grey White

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject']

snapshots/freesurfer/greywhite/snapshot_freesurfer_greywhite_{subject}

Formats: ['PNG image']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Snapshot Gyral Parcellation

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

snapshots/freesurfer/gyri/snapshot_freesurfer_left_gyri_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/gyri/snapshot_freesurfer_left_gyri_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'
snapshots/freesurfer/gyri/snapshot_freesurfer_right_gyri_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/gyri/snapshot_freesurfer_right_gyri_{subject}
Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot Meshcut

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject']

snapshots/freesurfer/meshcut/snapshot_freesurfer_meshcut_{subject}

Formats: ['PNG image']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Snapshot Pial Mesh

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

snapshots/freesurfer/aimspial/snapshot_freesurfer_left_aimspial_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/aimspial/snapshot_freesurfer_left_aimspial_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'
snapshots/freesurfer/aimspial/snapshot_freesurfer_right_aimspial_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/aimspial/snapshot_freesurfer_right_aimspial_{subject}
Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot Thickness Map

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

snapshots/freesurfer/thickness/snapshot_freesurfer_left_thickness_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/thickness/snapshot_freesurfer_left_thickness_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'
snapshots/freesurfer/thickness/snapshot_freesurfer_right_thickness_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/thickness/snapshot_freesurfer_right_thickness_{subject}
Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshot White Mesh

Parent types:
Snapshot

2D Image

3D Volume

4D Volume

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

snapshots/freesurfer/aimswhite/snapshot_freesurfer_left_aimswhite_{subject}

Formats: ['PNG image']
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'

snapshots/freesurfer/aimswhite/snapshot_freesurfer_left_aimswhite_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
processing = 'freesurfer'
snapshots/freesurfer/aimswhite/snapshot_freesurfer_right_aimswhite_{subject}
Formats: ['PNG image']
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

snapshots/freesurfer/aimswhite/snapshot_freesurfer_right_aimswhite_{subject}
Formats: ['PNG image']
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
processing = 'freesurfer'

Snapshots Dir

Parent types:
Directory

Any Type

Key: []

snapshots

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

Snapshots Features Table

Parent types:
Numerical Table

CSV file

Text file

Any Type

Key: []

tables/snapshots_features_freesurfer

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

Snapshots Grey White Quality Scores

Parent types:
CSV file

Text file

Any Type

Key: []

snapshots/freesurfer/greywhite/qc_greywhite

Formats: ['CSV file']
Rule selection key: () ()
Priority offset: 0
processing = 'freesurfer'

SphereReg

Parent types:
FreesurferMesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.sphere.reg

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'

{subject}/surf/lh.sphere.reg
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
{subject}/surf/rh.sphere.reg
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'

{subject}/surf/rh.sphere.reg
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'

Subject

Parent types:
Any Type

Key: ['subject']

{subject}

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

T1 FreesurferAnat

Parent types:
FreesurferAnat

T1 MRI

3D Volume

4D Volume

Any Type

Key: ['subject']

{subject}/mri/orig

Formats: ['gz compressed NIFTI-1 image', 'NIFTI-1 image', 'GIS image', 'SPM image', 'VIDA image', 'ECAT v image', 'ECAT i image', 'JPEG image', 'GIF image', 'PNG image', 'MNG image', 'BMP image', 'PBM image', 'PGM image', 'PPM image', 'XBM image', 'XPM image', 'TIFF image', 'TIFF(.tif) image', 'MINC image', 'gz compressed MINC image', 'DICOM image', 'Directory', 'FDF image', 'TIFF image', 'TIFF(.tif) image', 'Aperio svs', 'Hamamatsu vms', 'Hamamatsu vmu', 'Leica scn', 'Hamamatsu ndpi', 'Sakura svslide', 'Ventana bif', 'Zeiss czi', 'FreesurferMGZ']
Rule selection key: () ()
Priority offset: 0

Tables Directory

Parent types:
Directory

Any Type

Key: []

tables

Formats: ['Directory']
Rule selection key: () ()
Priority offset: 0

Talairach Auto Freesurfer

Parent types:
MINC transformation matrix

Any Type

Key: ['subject']

{subject}/mri/transforms/talairach.auto

Formats: ['MINC transformation matrix']
Rule selection key: () ()
Priority offset: 0

Transformation to Scanner Based Referential

Parent types:
Transformation matrix

Transformation

Any Type

Key: ['subject']

{subject}/mri/transforms/orig_<subject>_TO_Scanner_Based

Formats: ['Transformation matrix', 'Matlab file']
Rule selection key: () ()
Priority offset: 0

White

Parent types:
White Mesh

Mesh

Any Type

Key: ['subject', 'side']

Rules selection key: ['side'] []

{subject}/surf/lh.white

Formats: 'BrainVISA mesh formats'
Rule selection key: ('left',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/lh.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'left'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'
{subject}/surf/rh.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'

{subject}/surf/rh.white
Formats: 'BrainVISA mesh formats'
Rule selection key: ('right',) ()
Priority offset: 0
side = 'right'
averaged = 'No'
inflated = 'No'
vertex_corr = 'No'