Search found 8 matches

by mdojat
Thu Sep 15, 2011 8:27 am
Forum: BrainVISA
Topic: Installation problem on Mac OSX Lion 2.7
Replies: 16
Views: 18458

Re: Installation problem on Mac OSX Lion 2.7

It seems working if:
- all libsqlite3* files in the lib/ directory are moved
- file libBLAS.dylib in the lib/directory is moved

Best
Michel
by mdojat
Wed Oct 22, 2008 4:31 pm
Forum: Anatomist
Topic: Nifti with Anatomist
Replies: 5
Views: 6601

Re: Nifti with Anatomist

Hum, We tried your suggestion: the use of "Apply building referential" but without succeeding. We add to this email two examples of the superpostion of two images, anatomical and fonctional, using Anatomist and Mricron. As you can see the superposition is correct with the later but not the...
by mdojat
Wed Oct 08, 2008 3:00 pm
Forum: Anatomist
Topic: Nifti with Anatomist
Replies: 5
Views: 6601

Nifti with Anatomist

We have troubles in openning Nifti files. We have a structural image and fMRI images in nifti format (3D or 4D). In their respective hdr, the orientation parameters (equivalent to .mat files in SPM2) are different. With SPM5 and MRICron the images can be superimposed. With anatomist apparently the o...
by mdojat
Mon Aug 25, 2008 1:40 pm
Forum: BrainVISA
Topic: referential trnsformation
Replies: 1
Views: 2683

referential trnsformation

Hi, I would like to visualize using BV/Anatomist 3.1 images produced by Spm5. Images are coregistered in the same space but not resliced. I have referential troubles. With previous versions I used SPM to AIMS transformation converter. Is this converter alwayd needed or should I follow a new procedur...
by mdojat
Thu Sep 07, 2006 8:45 am
Forum: BrainVISA
Topic: missing converters
Replies: 2
Views: 3342

missing converters

Hello, Using BV 3.0.2, in expert mode, I access only to a short list of converters. Especially SPM to AIMS is missing. The path to matlab is correctly put. However, the logfile indicates 'pymat6 or 'pymat7 importation failed' error for a path to matlab6_5 or to matlab7 respectively. How can I solve ...
by mdojat
Thu Jun 16, 2005 8:50 am
Forum: BrainVISA
Topic: spm to aims transformation converter
Replies: 4
Views: 5912

spm to aims transformation converter

riviere wrote:Well, the last time we tried it, it seemed to work. Maybe we are not exactly in the same conditions ? Do both SPM images have a .mat attached ?
Denis
yes they do.
by mdojat
Wed Jun 15, 2005 10:43 am
Forum: Anatomist
Topic: projection methods
Replies: 1
Views: 3875

projection methods

I would like to better understand the projection methods used when one wants to project activations on a reconstructed or inflated cortical surface. This is a central point for the correctness of the displayed results. What does 'moyenne corrigée' and 'moyenne rehaussée' (in french in my version) ex...
by mdojat
Wed Jun 15, 2005 10:31 am
Forum: BrainVISA
Topic: spm to aims transformation converter
Replies: 4
Views: 5912

spm to aims transformation converter

Apparently, the script "spm to aims transformation converter" fails for the calculation of a tranformation matrix when the registered_volume is rotated (in my case of 0.8 rd around X). Although, my input transformation ensures a correct superposition of my two images under SPM. Have you an...