Search found 5 matches

by elabyt
Fri Oct 01, 2010 10:37 am
Forum: BrainVISA
Topic: segmentation from masks generated with other tools
Replies: 3
Views: 4573

Re: segmentation from masks generated with other tools

Hi Dominique, I tried that you recommended me but when i use the AimsmeshBrain command, I have an error message: what ( ) : bet_outskull_mask.nii: format error which type of format is required for this command as input ? I also tried to import my mask as you recommended and in this case, i also have...
by elabyt
Fri Sep 03, 2010 5:04 pm
Forum: BrainVISA
Topic: segmentation from masks generated with other tools
Replies: 3
Views: 4573

segmentation from masks generated with other tools

Dear all, I try to do a segmentation of a pre-surgery MRI (with stereotactic frame). So, MRI contains artefacts from the stereotactic frame. I built head and brain masks with another tool and I would like to use these maske to build the corrersponding meshes in BrainVisa. The head and brain masks ar...
by elabyt
Thu Aug 26, 2010 9:32 am
Forum: BrainVISA
Topic: Bug Segmentation pipeline
Replies: 0
Views: 29992

Bug Segmentation pipeline

Dear all, I try to use segmentation pipeline and for the first time, i have a strange error message: Process T1 Pipeline 2007 1 started on 2010/08/25 17:50 in T1 Pipeline 2007 1 uuid cannot be saved in minf file: [Errno 2] No such file or directory: u'D:\\Mes Documents\\DataIRM\\BrainVisa DataBase\\...
by elabyt
Wed Jun 30, 2010 2:45 pm
Forum: BrainVISA
Topic: exclude MRI slices before segmentation
Replies: 3
Views: 4336

Re: exclude MRI slices before segmentation

Hi Jean-François, Could you give me more details ? Which parameter can be used to exclude the last N slices in the Biais correction process ? I saw in the module "correction brain mask from T1 MRI" two parameters entitled "first slice" and "last slice". When I use this,...
by elabyt
Tue Jun 29, 2010 2:09 pm
Forum: BrainVISA
Topic: exclude MRI slices before segmentation
Replies: 3
Views: 4336

exclude MRI slices before segmentation

Hello,
I would like exclude some MRI slices before the segmentation step. Do you know how can I do this (if it's possible) in Brainvisa or Anatomist?
Thanks !
Etienne